mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,473,882 | 0 | T | G | 25.4% | 90.4 / 10.4 | 63 | L94R (CTG→CGG) | yfdP | CPS‑53 (KpLE1) prophage, uncharacterized protein |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 228744 | 64 (0.950) | 10 (0.150) | 6/272 | 8.3 | 14.0% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 4171802 | 75 (1.110) | 14 (0.210) | 6/280 | 8.5 | 14.8% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213161 | 87 (1.310) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3946823 | 14 (0.210) | 10 (0.150) | 6/280 | 8.5 | 18.4% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171800 | 75 (1.130) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 10 (0.150) | 6/280 | 8.5 | 11.9% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 75 (1.110) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 3946823 | 14 (0.210) | 10 (0.150) | 5/280 | 9.2 | 17.3% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040680 | 82 (1.230) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 10 (0.150) | 5/280 | 9.2 | 11.0% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040682 | 82 (1.220) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 2511350 = | NA (NA) | 4 (0.060) | 4/270 | 9.5 | NA | noncoding (1/88 nt) | REP172 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP172 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 2511382 = | NA (NA) | noncoding (33/88 nt) | REP172 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP172 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2098422 | 77 (1.140) | 4 (0.060) | 4/268 | 9.5 | 5.1% | intergenic (‑121/+25) | wzzB/ugd | regulator of length of O‑antigen component of lipopolysaccharide chains/UDP‑glucose 6‑dehydrogenase |
| ? | NC_000913 | = 2098429 | 75 (1.180) | intergenic (‑128/+18) | wzzB/ugd | regulator of length of O‑antigen component of lipopolysaccharide chains/UDP‑glucose 6‑dehydrogenase | |||||
| * | ? | NC_000913 | = 1459907 | 69 (1.020) | 4 (0.060) | 4/276 | 9.7 | 5.6% | coding (854/1428 nt) | paaH | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| ? | NC_000913 | = 1459924 | 67 (1.020) | coding (871/1428 nt) | paaH | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent | |||||
| * | ? | NC_000913 | = 4040682 | 82 (1.220) | 14 (0.210) | 4/280 | 9.8 | 14.3% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213161 | 87 (1.310) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||