mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,462,881 | 0 | C | . | 25.0% | 24.6 / 10.4 | 16 | intergenic (+235/‑131) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| * | NC_000913 | 3,156,590 | 0 | C | A | 21.6% | 75.3 / 17.5 | 37 | intergenic (+72/‑33) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| * | NC_000913 | 3,156,591 | 0 | T | G | 21.6% | 68.9 / 20.5 | 37 | intergenic (+73/‑32) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1604785 = | 34 (1.370) | 4 (0.170) | 4/256 | 2.6 | 10.6% | coding (739/993 nt) | lsrD | autoinducer 2 import system permease protein |
| ? | NC_000913 | 1604815 = | 35 (1.490) | coding (769/993 nt) | lsrD | autoinducer 2 import system permease protein | |||||
| * | ? | NC_000913 | 4608119 = | 23 (0.930) | 4 (0.170) | 4/258 | 2.7 | 14.5% | coding (317/414 nt) | holD | DNA polymerase III, psi subunit |
| ? | NC_000913 | 4608161 = | 25 (1.050) | coding (359/414 nt) | holD | DNA polymerase III, psi subunit | |||||
| * | ? | NC_000913 | = 3440126 | 46 (1.850) | 4 (0.170) | 4/258 | 2.7 | 8.3% | coding (904/990 nt) | rpoA | RNA polymerase, alpha subunit |
| ? | NC_000913 | = 3440131 | 44 (1.850) | coding (899/990 nt) | rpoA | RNA polymerase, alpha subunit | |||||
| * | ? | NC_000913 | 2617476 = | 27 (1.090) | 4 (0.170) | 4/258 | 2.7 | 13.4% | coding (1383/1464 nt) | bepA | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| ? | NC_000913 | 2617529 = | 26 (1.090) | coding (1436/1464 nt) | bepA | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic | |||||
| * | ? | NC_000913 | 1805292 = | 23 (0.930) | 4 (0.160) | 4/264 | 2.7 | 15.2% | intergenic (+20/+33) | yniD/ydiY | uncharacterized protein/acid‑inducible putative outer membrane protein |
| ? | NC_000913 | 1805317 = | 22 (0.910) | intergenic (+45/+8) | yniD/ydiY | uncharacterized protein/acid‑inducible putative outer membrane protein | |||||
| * | ? | NC_000913 | 158081 = | 25 (1.010) | 4 (0.170) | 4/258 | 2.7 | 15.7% | coding (1046/1398 nt) | pcnB | poly(A) polymerase |
| ? | NC_000913 | 158131 = | 19 (0.800) | coding (996/1398 nt) | pcnB | poly(A) polymerase | |||||
| * | ? | NC_000913 | = 3780085 | 19 (0.760) | 3 (0.130) | 3/252 | 3.0 | 14.4% | coding (259/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| ? | NC_000913 | = 3780114 | 18 (0.780) | coding (288/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
| * | ? | NC_000913 | = 3516750 | 16 (0.640) | 3 (0.130) | 3/254 | 3.0 | 15.0% | coding (557/1287 nt) | damX | cell division protein that binds to the septal ring |
| ? | NC_000913 | = 3516781 | 19 (0.810) | coding (526/1287 nt) | damX | cell division protein that binds to the septal ring | |||||
| * | ? | NC_000913 | 2645510 = | 24 (0.970) | 4 (0.170) | 3/260 | 3.0 | 14.5% | coding (1816/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| ? | NC_000913 | 2645550 = | 24 (1.000) | coding (1776/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein | |||||
| * | ? | NC_000913 | = 2421283 | 30 (1.210) | 3 (0.130) | 3/252 | 3.0 | 10.2% | intergenic (+15/‑42) | yfcG/folX | GSH‑dependent disulfide bond oxidoreductase/D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| ? | NC_000913 | = 2421313 | 25 (1.080) | intergenic (+45/‑12) | yfcG/folX | GSH‑dependent disulfide bond oxidoreductase/D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase | |||||