mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,915,640 | 0 | G | A | 56.2% | 2.2 / 32.8 | 36 | V163V (GTC→GTT) | msrC | free methionine‑(R)‑sulfoxide reductase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.2% | 73.5 / 22.8 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3148956 | 38 (0.910) | 6 (0.150) | 5/266 | 5.0 | 14.0% | intergenic (+19/+21) | gpr/yqhA | L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein |
| ? | NC_000913 | = 3148961 | 38 (0.970) | intergenic (+24/+16) | gpr/yqhA | L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.130) | 4/264 | 5.5 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4578582 | 54 (1.300) | 4 (0.100) | 4/270 | 5.6 | 7.2% | coding (756/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB |
| ? | NC_000913 | = 4578585 | 52 (1.310) | coding (753/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB | |||||
| * | ? | NC_000913 | 1954429 = | NA (NA) | 4 (0.100) | 4/268 | 5.6 | NA | noncoding (1/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2549533 | NA (NA) | noncoding (68/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1279401 = | 36 (0.870) | 4 (0.100) | 4/272 | 5.6 | 10.4% | intergenic (+53/‑463) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279431 = | 34 (0.850) | intergenic (+83/‑433) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | 793324 = | 45 (1.080) | 4 (0.100) | 4/268 | 5.6 | 8.9% | coding (465/1473 nt) | modF | molybdate ABC transporter ATPase |
| ? | NC_000913 | 793350 = | 39 (0.990) | coding (439/1473 nt) | modF | molybdate ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3349145 | 34 (0.820) | 4 (0.100) | 4/276 | 5.7 | 11.2% | coding (665/729 nt) | mtgA | biosynthetic peptidoglycan transglycosylase |
| ? | NC_000913 | = 3349179 | 30 (0.740) | coding (631/729 nt) | mtgA | biosynthetic peptidoglycan transglycosylase | |||||
| * | ? | NC_000913 | 4542682 = | 34 (0.820) | 3 (0.080) | 3/264 | 6.1 | 7.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 43 (1.100) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3270070 = | 26 (0.630) | 4 (0.100) | 3/262 | 6.1 | 13.5% | intergenic (+468/+146) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | 3270094 = | 27 (0.700) | intergenic (+492/+122) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | = 2729464 | 31 (0.750) | 3 (0.080) | 3/266 | 6.1 | 10.1% | intergenic (‑20/+152) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4168349 = | 24 (0.610) | intergenic (+149/‑23) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||