mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.8% | 56.4 / 30.7 | 54 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,598,904 | 0 | T | C | 22.9% | 57.6 / 11.2 | 35 | S436G (AGT→GGT) | lsrK | autoinducer‑2 (AI‑2) kinase |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 6 (0.140) | 5/280 | 5.3 | 12.4% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171803 | 43 (0.990) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4542690 | 56 (1.290) | 4 (0.100) | 4/266 | 5.6 | 6.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 56 (1.380) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2196343 = | 50 (1.150) | 4 (0.100) | 4/266 | 5.6 | 7.9% | intergenic (+10/‑131) | metG/yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | NC_000913 | 2196367 = | 46 (1.130) | intergenic (+34/‑107) | metG/yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | NC_000913 | = 2600973 | 44 (1.020) | 4 (0.100) | 4/270 | 5.7 | 8.0% | intergenic (+25/‑228) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit |
| ? | NC_000913 | = 2600983 | 50 (1.220) | intergenic (+35/‑218) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit | |||||
| * | ? | NC_000913 | 2460605 = | 34 (0.790) | 3 (0.070) | 3/266 | 6.2 | 8.6% | intergenic (‑136/+45) | fadI/yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| ? | NC_000913 | 2460634 = | 32 (0.790) | intergenic (‑165/+16) | fadI/yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein | |||||
| * | ? | NC_000913 | = 1387244 | 37 (0.850) | 3 (0.070) | 3/268 | 6.2 | 7.6% | coding (525/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387310 | 38 (0.930) | coding (591/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | NC_000913 | = 4158460 | 54 (1.250) | 3 (0.070) | 3/270 | 6.3 | 5.7% | intergenic (‑66/‑30) | oxyS/oxyR | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator |
| ? | NC_000913 | = 4158470 | 48 (1.170) | intergenic (‑76/‑20) | oxyS/oxyR | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator | |||||
| * | ? | NC_000913 | = 3620255 | 0 (0.000) | 3 (0.070) | 3/272 | 6.3 | 100% | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3763211 | 0 (0.000) | coding (1029/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 954845 = | 48 (1.110) | 3 (0.070) | 3/270 | 6.3 | 6.3% | intergenic (‑379/+27) | focA/ycaO | formate channel/ribosomal protein S12 methylthiotransferase accessory factor |
| ? | NC_000913 | 954864 = | 44 (1.070) | intergenic (‑398/+8) | focA/ycaO | formate channel/ribosomal protein S12 methylthiotransferase accessory factor | |||||
| * | ? | NC_000913 | = 314414 | 47 (1.090) | 3 (0.070) | 3/276 | 6.4 | 5.7% | pseudogene (58/872 nt) | eaeH | pseudogene, attaching and effacing protein homology;factor; Not classified |
| ? | NC_000913 | = 314426 | 53 (1.260) | pseudogene (70/872 nt) | eaeH | pseudogene, attaching and effacing protein homology;factor; Not classified | |||||