mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,495 | 0 | A | T | 45.5% | 17.0 / 46.6 | 44 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1104930 | 80 (1.250) | 7 (0.120) | 6/266 | 7.4 | 8.3% | intergenic (+28/‑31) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| ? | NC_000913 | = 1104934 | 79 (1.320) | intergenic (+32/‑27) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein | |||||
| * | ? | NC_000913 | = 292301 | 80 (1.250) | 5 (0.080) | 5/264 | 7.9 | 6.2% | intergenic (+70/+21) | yagJ/yagK | CP4‑6 prophage, uncharacterized protein,Phage or Prophage Related/CP4‑6 prophage, conserved protein |
| ? | NC_000913 | = 292302 | 78 (1.320) | intergenic (+71/+20) | yagJ/yagK | CP4‑6 prophage, uncharacterized protein,Phage or Prophage Related/CP4‑6 prophage, conserved protein | |||||
| * | ? | NC_000913 | 3176789 = | 85 (1.330) | 4 (0.070) | 4/270 | 8.7 | 4.7% | coding (43/828 nt) | cpdA | 3',5' cAMP phosphodiesterase |
| ? | NC_000913 | 3176810 = | 80 (1.320) | coding (22/828 nt) | cpdA | 3',5' cAMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 1396634 | NA (NA) | 4 (0.070) | 4/270 | 8.7 | 6.5% | coding (559/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 1428170 = | 61 (0.960) | coding (557/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 4 (0.070) | 4/270 | 8.7 | NA | coding (593/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274559 = | NA (NA) | coding (559/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 1396498 = | NA (NA) | 7 (0.110) +CGC |
4/278 | 8.9 | 9.0% | coding (423/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 1428369 | 72 (1.130) | coding (358/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1189119 | 64 (1.000) | 4 (0.060) | 4/276 | 8.9 | 5.9% | coding (658/1461 nt) | phoQ | sensory histidine kinase in two‑component regulatory system with PhoP |
| ? | NC_000913 | = 1189142 | 66 (1.070) | coding (635/1461 nt) | phoQ | sensory histidine kinase in two‑component regulatory system with PhoP | |||||
| * | ? | NC_000913 | 274692 = | NA (NA) | 4 (0.060) | 4/276 | 8.9 | NA | coding (426/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274732 = | NA (NA) | coding (386/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 3775580 = | 68 (1.070) | 4 (0.060) | 4/282 | 9.0 | 5.5% | coding (10/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | 3775604 = | 71 (1.120) | coding (34/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | = 4200313 | 81 (1.270) | 3 (0.050) | 3/264 | 9.3 | 4.0% | coding (34/273 nt) | hupA | HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | = 4200367 | 68 (1.150) | coding (88/273 nt) | hupA | HU, DNA‑binding transcriptional regulator, alpha subunit | |||||