mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,917,404 | 0 | A | T | 26.7% | 112.7 / 10.7 | 63 | V287V (GTT→GTA) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| * | NC_000913 | 3,255 | 0 | A | G | 25.4% | 81.6 / 10.2 | 56 | Q152R (CAG→CGG) | thrB | homoserine kinase |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 71 (1.070) | 7 (0.130) +28 bp |
5/228 | 7.5 | 17.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097456 = | 10 (0.150) | intergenic (+627/+109) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 71 (1.070) | 7 (0.130) +28 bp |
5/228 | 7.5 | 17.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097275 = | 14 (0.210) | intergenic (+446/+290) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 71 (1.070) | 7 (0.130) +28 bp |
5/228 | 7.5 | 13.6% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097094 = | 40 (0.610) | intergenic (+265/+471) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 4 (0.080) | 3/206 | 8.2 | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 668251 | 62 (0.940) | 5 (0.080) | 5/266 | 8.6 | 7.9% | coding (465/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 668256 | 59 (0.950) | coding (460/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1856323 = | 70 (1.060) | 4 (0.070) | 4/264 | 9.2 | 6.0% | coding (606/948 nt) | ydjH | putative kinase |
| ? | NC_000913 | 1856345 = | 60 (0.980) | coding (584/948 nt) | ydjH | putative kinase | |||||
| * | ? | NC_000913 | = 2243919 | 65 (0.980) | 4 (0.060) | 4/274 | 9.5 | 6.0% | coding (12/837 nt) | yeiG | S‑formylglutathione hydrolase |
| ? | NC_000913 | = 2243922 | 63 (0.990) | coding (15/837 nt) | yeiG | S‑formylglutathione hydrolase | |||||
| * | ? | NC_000913 | = 1592576 | 65 (0.980) | 3 (0.050) | 3/248 | 9.5 | 5.0% | intergenic (‑134/+89) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | NC_000913 | = 1592558 | 57 (0.990) | intergenic (‑116/+107) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | NC_000913 | = 4383658 | 81 (1.230) | 4 (0.060) | 3/266 | 10.0 | 5.0% | intergenic (+37/‑182) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
| ? | NC_000913 | = 4383665 | 75 (1.210) | intergenic (+44/‑175) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter | |||||
| * | ? | NC_000913 | 4108698 = | 103 (1.560) | 3 (0.050) | 3/270 | 10.1 | 3.1% | intergenic (+185/‑135) | pfkA/sbp | 6‑phosphofructokinase I/sulfate transporter subunit |
| ? | NC_000913 | 4108717 = | 90 (1.430) | intergenic (+204/‑116) | pfkA/sbp | 6‑phosphofructokinase I/sulfate transporter subunit | |||||