mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,070,462 | 0 | T | C | 45.3% | 21.7 / 114.6 | 75 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 888,014 | 0 | T | G | 31.6% | 222.5 / 23.3 | 95 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.4% | 343.6 / 206.2 | 214 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,908,526 | 0 | A | G | 27.4% | 127.0 / 16.1 | 62 | intergenic (‑160/+23) | pstB/pstA | phosphate ABC transporter ATP binding subunit/phosphate ABC transporter membrane subunit PstA |
| * | NC_000913 | 897,355 | 0 | T | G | 26.8% | 142.8 / 10.2 | 56 | V91G (GTG→GGG) | potI | putrescine ABC transporter membrane subunit PotI |
| * | NC_000913 | 3,180,341 | 0 | G | T | 26.6% | 168.3 / 21.7 | 65 | G200C (GGT→TGT) | ygiB | DUF1190 domain‑containing protein YgiB |
| * | NC_000913 | 802,118 | 0 | A | C | 25.4% | 161.0 / 10.7 | 59 | T78P (ACC→CCC) | ybhI | putative tricarboxylate transporter |
| * | NC_000913 | 176,268 | 0 | A | G | 24.6% | 139.6 / 16.6 | 61 | T388A (ACG→GCG) | clcA | chloride:H(+) antiporter ClcA |
| * | NC_000913 | 599,576 | 0 | T | G | 24.2% | 179.6 / 12.1 | 63 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 2,386,862 | 0 | G | A | 24.1% | 133.3 / 26.8 | 58 | intergenic (+31/‑72) | yfbL/yfbM | putative peptidase YfbL/DUF1877 domain‑containing protein YfbM |
| * | NC_000913 | 4,457,099 | 0 | G | T | 24.1% | 159.3 / 12.7 | 54 | G439C (GGT→TGT) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 1,489,174 | 0 | G | T | 22.9% | 207.6 / 14.6 | 71 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A |
| * | NC_000913 | 4,332,791 | 0 | A | C | 22.2% | 179.1 / 11.0 | 64 | V161G (GTG→GGG) | basS | sensory histidine kinase BasS |
| * | NC_000913 | 589,930 | 0 | A | G | 21.9% | 159.7 / 18.1 | 65 | L342P (CTC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane protein |
| * | NC_000913 | 2,368,569 | 0 | A | C | 21.9% | 199.1 / 13.9 | 66 | L177F (TTA→TTC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| * | NC_000913 | 2,840,644 | 0 | C | T | 21.7% | 173.6 / 12.6 | 69 | S374F (TCC→TTC) | ascF | beta‑glucoside specific PTS enzyme IIBC component |
| * | NC_000913 | 1,245,234 | 0 | G | T | 21.7% | 247.4 / 24.9 | 83 | L25F (TTG→TTT) | ycgY | uncharacterized protein YcgY |
| * | NC_000913 | 2,979,810 | 0 | G | T | 21.3% | 265.3 / 17.8 | 89 | A264S (GCG→TCG) | lysR | DNA‑binding transcriptional dual regulator LysR |
| * | NC_000913 | 2,840,640 | 0 | A | G | 21.3% | 193.6 / 17.7 | 75 | I373V (ATT→GTT) | ascF | beta‑glucoside specific PTS enzyme IIBC component |
| * | NC_000913 | 941,713 | 0 | T | G | 21.0% | 237.0 / 16.3 | 82 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 71 (0.730) | 11 (0.120) | 10/92 | 6.9 | 14.6% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 62 (0.680) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||