mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 40.0% | ‑3.8 / 22.3 | 20 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 35.0% | 6.2 / 14.0 | 20 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 20.5% | 162.9 / 15.8 | 84 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2753972 = | 73 (0.860) | 3 (0.040) | 3/536 | 9.7 | 4.1% | intergenic (+26/+36) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| ? | NC_000913 | 2754001 = | 70 (0.860) | intergenic (+55/+7) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein | |||||
| * | ? | NC_000913 | = 2440912 | 58 (0.680) | 3 (0.040) | 3/538 | 9.7 | 4.8% | coding (694/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| ? | NC_000913 | 2441048 = | 63 (0.780) | coding (558/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I | |||||
| * | ? | NC_000913 | 4156980 = | 74 (0.870) | 3 (0.040) | 3/544 | 9.8 | 3.6% | coding (131/1374 nt) | argH | argininosuccinate lyase |
| ? | NC_000913 | 4157551 = | 87 (1.060) | coding (702/1374 nt) | argH | argininosuccinate lyase | |||||
| * | ? | NC_000913 | 4520078 = | 82 (0.960) | 3 (0.040) | 3/552 | 9.9 | 3.2% | coding (247/987 nt) | yjhU | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| ? | NC_000913 | 4520796 = | 101 (1.210) | coding (1225/1350 nt) | yjhF | putative transporter | |||||
| * | ? | NC_000913 | 3905048 = | 90 (1.060) | 3 (0.040) | 3/552 | 9.9 | 3.2% | coding (550/1878 nt) | bglF | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | NC_000913 | 3905536 = | 94 (1.130) | coding (62/1878 nt) | bglF | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component | |||||
| * | ? | NC_000913 | 3089263 = | 90 (1.060) | 3 (0.040) | 3/556 | 9.9 | 3.0% | coding (980/1395 nt) | galP | D‑galactose transporter |
| ? | NC_000913 | 3089461 = | 107 (1.270) | coding (1178/1395 nt) | galP | D‑galactose transporter | |||||
| * | ? | NC_000913 | 1464825 = | 75 (0.880) | 3 (0.040) | 3/552 | 9.9 | 3.9% | coding (355/591 nt) | paaY | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein |
| ? | NC_000913 | 1464853 = | 74 (0.890) | coding (383/591 nt) | paaY | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein | |||||
| * | ? | NC_000913 | 4049682 = | 98 (1.150) | 3 (0.040) | 3/564 | 10.0 | 3.0% | coding (2717/2787 nt) | polA | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| ? | NC_000913 | 4049911 = | 94 (1.100) | noncoding (13/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||