mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,928,343 | 0 | G | A | 33.7% | 101.9 / 75.9 | 98 | L39L (CTG→CTA) | sdaC | putative serine transporter |
| * | NC_000913 | 3,214,646 | 0 | T | G | 25.6% | 153.5 / 17.6 | 82 | S534S (TCT→TCG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 3,214,658 | 0 | A | G | 22.6% | 162.4 / 14.9 | 84 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Marginal new junction evidence (lowest skew 10 of 198 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 10 (0.110) | 10/276 | 10.2 | NA | intergenic (‑32/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| ? | NC_000913 | 381312 = | NA (NA) | intergenic (‑52/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA | |||||
| * | ? | NC_000913 | 2727889 = | NA (NA) | 23 (0.260) | 10/282 | 10.4 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 53 (0.570) | 23 (0.260) | 10/282 | 10.4 | 31.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2894836 = | NA (NA) | 6 (0.090) +42 bp |
5/210 | 10.6 | 6.7% | noncoding (31/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4614539 = | 117 (1.250) | noncoding (282/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 2894836 = | NA (NA) | 6 (0.090) +42 bp |
5/210 | 10.6 | 6.9% | noncoding (31/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4614337 = | 113 (1.210) | noncoding (80/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 4229412 | NA (NA) | 6 (0.090) +41 bp |
5/212 | 10.7 | 6.7% | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4614539 = | 117 (1.250) | noncoding (282/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 4229412 | NA (NA) | 6 (0.090) +41 bp |
5/212 | 10.7 | 6.9% | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4614337 = | 113 (1.210) | noncoding (80/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 551353 = | NA (NA) | 6 (0.090) +41 bp |
5/212 | 10.7 | 6.7% | intergenic (+21/+174) | ybcF/purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| ? | NC_000913 | 4614539 = | 117 (1.250) | noncoding (282/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 551353 = | NA (NA) | 6 (0.090) +41 bp |
5/212 | 10.7 | 6.9% | intergenic (+21/+174) | ybcF/purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| ? | NC_000913 | 4614337 = | 113 (1.210) | noncoding (80/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 741061 | NA (NA) | 6 (0.090) +40 bp |
5/214 | 10.8 | 6.6% | intergenic (+136/+14) | phr/dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| ? | NC_000913 | 4614539 = | 117 (1.250) | noncoding (282/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||