mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4554393 | 147 (0.890) | 4 (0.030) | 4/244 | NT | 2.5% | intergenic (+32/‑183) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 4554409 | 175 (1.130) | intergenic (+48/‑167) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 4542690 | 124 (0.750) | 4 (0.030) | 3/244 | NT | 2.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 177 (1.150) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 122 (0.740) | 6 (0.040) | 5/244 | NT | 4.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 177 (1.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4534139 | 204 (1.230) | 7 (0.050) | 7/242 | NT | 3.4% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 208 (1.360) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4438655 | 155 (0.940) | 6 (0.040) | 6/242 | NT | 3.7% | intergenic (+10/+53) | ytfI/ytfJ | uncharacterized protein/putative transcriptional regulator |
| ? | NC_000913 | = 4438666 | 168 (1.100) | intergenic (+21/+42) | ytfI/ytfJ | uncharacterized protein/putative transcriptional regulator | |||||
| * | ? | NC_000913 | 4286330 = | 136 (0.820) | 4 (0.020) | 3/258 | NT | 2.9% | coding (1042/1959 nt) | acs | acetyl‑CoA synthetase |
| ? | NC_000913 | 4286367 = | 136 (0.830) | coding (1005/1959 nt) | acs | acetyl‑CoA synthetase | |||||
| * | ? | NC_000913 | = 4172353 | 170 (1.030) | 3 (0.020) | 3/250 | NT | 1.8% | coding (297/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4172384 | 157 (0.990) | coding (328/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 4160048 = | 176 (1.060) | 5 (0.030) | 4/246 | NT | 3.0% | coding (743/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble |
| ? | NC_000913 | 4160090 = | 162 (1.040) | coding (701/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble | |||||
| * | ? | NC_000913 | 4053577 = | NA (NA) | 5 (0.030) | 5/248 | NT | 4.2% | noncoding (48/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4053610 = | 113 (0.720) | noncoding (81/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3948418 | 197 (1.190) | 6 (0.040) | 5/252 | NT | 3.1% | coding (333/339 nt) | yifE | UPF0438 family protein |
| ? | NC_000913 | = 3948452 | 184 (1.150) | coding (1518/1521 nt) | yifB | magnesium chelatase family protein and putative transcriptional regulator | |||||