mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 22.6% | 159.1 / 14.3 | 84 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.3% | 86.2 / 10.6 | 48 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 142 (0.980) | 26 (0.190) | 22/482 | 5.0 | 17.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 115 (0.840) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 137 (0.940) | 22 (0.160) | 19/482 | 5.7 | 15.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 113 (0.830) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 38 (0.260) | 5 (0.040) | 5/496 | 11.2 | 6.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 98 (0.700) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4632130 | 168 (1.150) | 5 (0.030) | 5/512 | 11.4 | 3.0% | coding (1398/1938 nt) | slt | lytic murein transglycosylase, soluble |
| ? | NC_000913 | 4632139 = | 161 (1.110) | coding (1407/1938 nt) | slt | lytic murein transglycosylase, soluble | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 4 (0.030) | 3/436 | 11.6 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 2533414 | 128 (0.880) | 4 (0.030) | 4/490 | 11.7 | 3.2% | intergenic (+34/‑350) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| ? | NC_000913 | = 2533418 | 121 (0.870) | intergenic (+38/‑346) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) | |||||
| * | ? | NC_000913 | = 2713829 | 165 (1.130) | 4 (0.030) | 4/492 | 11.8 | 2.5% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 150 (1.080) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 756522 | 130 (0.910) | 9 (0.060) +GGC |
4/500 | 11.9 | 6.5% | coding (616/1767 nt) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| ? | NC_000913 | 756523 = | 131 (0.900) | coding (617/1767 nt) | sdhA | succinate dehydrogenase, flavoprotein subunit | |||||
| * | ? | NC_000913 | = 2296658 | 143 (0.980) | 4 (0.030) | 4/512 | 12.0 | 2.7% | coding (367/663 nt) | ccmB | heme export ABC transporter permease |
| ? | NC_000913 | 2296662 = | 142 (0.980) | coding (363/663 nt) | ccmB | heme export ABC transporter permease | |||||
| * | ? | NC_000913 | = 555905 | 162 (1.160) | 4 (0.030) +GGC |
3/486 | 12.4 | 2.4% | coding (1295/1386 nt) | cysS | cysteinyl‑tRNA synthetase |
| ? | NC_000913 | 555906 = | 165 (1.130) | coding (1296/1386 nt) | cysS | cysteinyl‑tRNA synthetase | |||||