mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 21.2% | 119.5 / 17.3 | 66 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 109 (0.920) | 24 (0.220) | 21/452 | 4.1 | 21.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 76 (0.690) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 373048 = | 127 (1.080) | 4 (0.040) | 4/448 | 9.4 | 3.3% | coding (128/951 nt) | mhpF | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| ? | NC_000913 | 373066 = | 118 (1.080) | coding (146/951 nt) | mhpF | acetaldehyde‑CoA dehydrogenase II, NAD‑binding | |||||
| * | ? | NC_000913 | 3102404 = | 97 (0.820) | 4 (0.040) | 4/468 | 9.7 | 3.4% | coding (449/720 nt) | trmI | tRNA m(7)G46 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3102683 = | 131 (1.150) | coding (170/720 nt) | trmI | tRNA m(7)G46 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4498181 = | NA (NA) | 4 (0.030) | 4/484 | 9.8 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+12/+81) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | NC_000913 | 3200578 = | 153 (1.300) | 4 (0.030) | 4/476 | 9.8 | 2.7% | coding (388/1302 nt) | ygiF | inorganic triphosphatase |
| ? | NC_000913 | 3201590 = | 140 (1.210) | coding (384/621 nt) | ygiM | SH3 domain protein | |||||
| * | ? | NC_000913 | 1049778 = | NA (NA) | 10 (0.080) | 4/484 | 9.8 | 21.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4507639 | 37 (0.310) | noncoding (1041/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 1049778 = | NA (NA) | 10 (0.080) | 4/484 | 9.8 | 20.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1470336 = | 39 (0.330) | noncoding (1041/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 381258 = | NA (NA) | 4 (0.030) | 4/482 | 9.8 | NA | pseudogene (3/417 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase |
| ? | NC_000913 | = 382589 | NA (NA) | noncoding (1330/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 127892 | 63 (0.530) | 4 (0.030) | 4/482 | 9.8 | 6.0% | intergenic (+305/‑20) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | 127896 = | 62 (0.530) | intergenic (+309/‑16) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913 | = 2320481 | 93 (0.830) | 3 (0.030) +CAGGCAGG |
3/444 | 10.0 | 3.1% | coding (439/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_000913 | 2320482 = | 98 (0.830) | coding (440/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC | |||||