mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4366488 | 104 (0.960) | 3 (0.030) | 3/336 | NT | 2.7% | coding (286/1302 nt) | dcuA | C4‑dicarboxylate antiporter |
| ? | NC_000913 | = 4366516 | 115 (1.090) | coding (258/1302 nt) | dcuA | C4‑dicarboxylate antiporter | |||||
| * | ? | NC_000913 | 4277024 = | 91 (0.840) | 3 (0.030) | 3/342 | NT | 3.3% | coding (1554/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 4277056 = | 86 (0.800) | coding (1586/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | 3813314 = | 354 (3.250) | 3 (0.030) | 3/340 | NT | 0.94% | coding (584/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| ? | NC_000913 | 3813344 = | 285 (2.680) | coding (614/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding | |||||
| * | ? | NC_000913 | = 3774359 | NA (NA) | 3 (0.030) | 3/334 | NT | 0.74% | intergenic (+165/‑65) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | = 3774387 | 403 (3.860) | intergenic (+193/‑37) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 3742297 = | 455 (4.180) | 4 (0.040) | 4/332 | NT | 1.0% | coding (236/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913 | 3742331 = | 357 (3.440) | coding (202/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||
| * | ? | NC_000913 | 3596422 = | 129 (1.180) | 3 (0.030) | 3/334 | NT | 2.5% | intergenic (‑19/+29) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit |
| ? | NC_000913 | 3596443 = | 111 (1.060) | intergenic (‑40/+8) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit | |||||
| * | ? | NC_000913 | 3305904 = | 85 (0.780) | 3 (0.030) | 3/330 | NT | 4.3% | intergenic (‑87/+67) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| ? | NC_000913 | 3305929 = | 54 (0.520) | intergenic (‑112/+42) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2477002 = | 119 (1.090) | 3 (0.030) | 3/324 | NT | 2.9% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913 | 2477035 = | 88 (0.870) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||
| * | ? | NC_000913 | = 2033367 | 92 (0.840) | 3 (0.030) | 3/334 | NT | 3.0% | coding (118/366 nt) | yedR | inner membrane protein |
| ? | NC_000913 | = 2045906 | 109 (1.040) | coding (969/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | 1944388 = | 113 (1.040) | 3 (0.030) | 3/336 | NT | 2.9% | coding (969/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| ? | NC_000913 | 1944415 = | 92 (0.880) | coding (942/1011 nt) | ruvB | ATP‑dependent DNA helicase, component of RuvABC resolvasome | |||||