mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4246671 | 97 (0.980) | 5 (0.050) | 4/314 | NT | 4.9% | intergenic (‑252/‑113) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase |
| ? | NC_000913 | = 4246695 | 99 (1.030) | intergenic (‑276/‑89) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase | |||||
| * | ? | NC_000913 | 4094379 = | 47 (0.470) | 4 (0.040) | 3/312 | NT | 8.2% | noncoding (64/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094606 = | 44 (0.460) | noncoding (291/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4094379 = | 47 (0.470) | 4 (0.040) | 3/294 | NT | 9.0% | noncoding (64/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094422 = | 38 (0.420) | noncoding (107/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4067526 = | 98 (0.990) | 3 (0.030) | 3/312 | NT | 3.0% | coding (1751/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| ? | NC_000913 | 4067557 = | 99 (1.030) | coding (1720/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase | |||||
| * | ? | NC_000913 | = 3809140 | 360 (3.620) | 3 (0.030) | 5/314 | NT | 0.83% | coding (601/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | = 3809156 | 371 (3.850) | coding (617/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) | |||||
| * | ? | NC_000913 | = 3795026 | 373 (3.750) | 7 (0.070) | 6/308 | NT | 1.9% | coding (98/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | = 3795059 | 375 (3.970) | coding (131/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | = 3784820 | 417 (4.190) | 5 (0.050) | 5/312 | NT | 1.2% | coding (196/432 nt) | yibN | putative rhodanese‑related sulfurtransferase |
| ? | NC_000913 | = 3784836 | 425 (4.440) | coding (180/432 nt) | yibN | putative rhodanese‑related sulfurtransferase | |||||
| * | ? | NC_000913 | 3770639 = | 336 (3.380) | 8 (0.080) | 8/310 | NT | 2.5% | coding (741/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump |
| ? | NC_000913 | 3770662 = | 299 (3.140) | coding (718/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | NC_000913 | 3761270 = | 434 (4.370) | 6 (0.060) | 5/314 | NT | 1.5% | intergenic (‑21/+77) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog |
| ? | NC_000913 | 3761292 = | 390 (4.050) | intergenic (‑43/+55) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog | |||||
| * | ? | NC_000913 | = 3736798 | 412 (4.140) | 3 (0.030) | 3/312 | NT | 0.76% | coding (380/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736838 | 382 (3.990) | coding (340/825 nt) | bax | putative glucosaminidase | |||||