mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3640591 | 160 (1.100) | 4 (0.030) | 4/456 | 12.0 | 2.7% | intergenic (+46/‑271) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| ? | NC_000913 | = 3640569 | 146 (1.100) | intergenic (+24/‑293) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B | |||||
| * | ? | NC_000913 | 4200145 = | 146 (1.000) | 4 (0.030) | 4/478 | 12.4 | 2.8% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | 4200182 = | 142 (1.020) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | NC_000913 | = 3820032 | 382 (2.710) | 27 (0.190) +CAT |
4/478 | 12.4 | 6.5% | coding (1139/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| ? | NC_000913 | 3820033 = | 390 (2.680) | coding (1138/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent | |||||
| * | ? | NC_000913 | = 3723076 | 492 (3.450) | 9 (0.060) +CAC |
4/484 | 12.5 | 1.8% | coding (1322/2070 nt) | glyS | glycine tRNA synthetase, beta subunit |
| ? | NC_000913 | 3723077 = | 498 (3.420) | coding (1321/2070 nt) | glyS | glycine tRNA synthetase, beta subunit | |||||
| * | ? | NC_000913 | 3680173 = | 149 (1.020) | 4 (0.030) | 4/492 | 12.6 | 2.4% | coding (755/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| ? | NC_000913 | 3680866 = | 176 (1.230) | coding (1075/1497 nt) | yhjJ | putative periplasmic M16 family chaperone | |||||
| * | ? | NC_000913 | = 4338982 | 142 (0.980) | 4 (0.030) | 4/498 | 12.7 | 2.7% | coding (1540/2268 nt) | adiA | arginine decarboxylase |
| ? | NC_000913 | 4338986 = | 142 (0.980) | coding (1536/2268 nt) | adiA | arginine decarboxylase | |||||
| * | ? | NC_000913 | = 3767365 | 541 (3.860) | 23 (0.160) +ACCTGT |
3/470 | 13.0 | 4.1% | pseudogene (145/945 nt) | rhsJ | Rhs‑family protein |
| ? | NC_000913 | 3767366 = | 543 (3.730) | pseudogene (146/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | = 2311378 | 119 (0.840) | 5 (0.040) +GCCCGG |
3/474 | 13.0 | 4.1% | coding (157/1056 nt) | apbE | putative thiamine‑synthetic flavin transferase lipoprotein |
| ? | NC_000913 | 2311379 = | 120 (0.830) | coding (156/1056 nt) | apbE | putative thiamine‑synthetic flavin transferase lipoprotein | |||||
| * | ? | NC_000913 | = 377391 | 133 (0.910) | 4 (0.030) | 3/474 | 13.0 | 2.9% | noncoding (57/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 377492 = | 142 (1.030) | noncoding (158/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 4542682 = | 71 (0.490) | 3 (0.020) | 3/482 | 13.1 | 3.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 114 (0.810) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||