mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 394 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4629401 = | 114 (0.810) | 7 (0.050) | 6/164 | NT | 6.5% | coding (1122/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | 4629431 = | 95 (0.740) | coding (1092/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | = 4607047 | 141 (1.010) | 7 (0.050) | 4/168 | NT | 4.9% | coding (654/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607088 | 136 (1.030) | coding (613/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4606620 = | 153 (1.090) | 7 (0.050) | 6/164 | NT | 5.0% | noncoding (63/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4606650 = | 126 (0.980) | intergenic (‑249/+19) | leuQ/rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4557056 | 114 (0.810) | 14 (0.110) | 8/162 | NT | 11.3% | coding (64/393 nt) | iraD | RpoS stabilzer after DNA damage, anti‑RssB factor |
| ? | NC_000913 | = 4557068 | 116 (0.910) | coding (76/393 nt) | iraD | RpoS stabilzer after DNA damage, anti‑RssB factor | |||||
| * | ? | NC_000913 | 4536087 = | 149 (1.060) | 15 (0.120) | 8/160 | NT | 9.8% | intergenic (+56/+527) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | NC_000913 | 4536120 = | 142 (1.130) | intergenic (+89/+494) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||
| * | ? | NC_000913 | = 4534139 | 146 (1.040) | 15 (0.120) | 9/158 | NT | 10.2% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 135 (1.090) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4531892 = | 140 (1.000) | 18 (0.140) | 10/160 | NT | 13.4% | intergenic (‑241/+158) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family |
| ? | NC_000913 | 4531924 = | 107 (0.850) | intergenic (‑273/+126) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family | |||||
| * | ? | NC_000913 | = 4513364 | 177 (1.260) | 7 (0.050) | 6/164 | NT | 4.0% | coding (46/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4513381 | 176 (1.370) | coding (29/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4512524 | 136 (0.970) | 4 (0.030) | 4/164 | NT | 3.0% | coding (886/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512556 | 137 (1.060) | coding (854/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4492819 = | 116 (0.830) | 7 (0.050) | 5/170 | NT | 6.0% | coding (533/765 nt) | idnO | 5‑keto‑D‑gluconate‑5‑reductase |
| ? | NC_000913 | 4492845 = | 108 (0.810) | coding (507/765 nt) | idnO | 5‑keto‑D‑gluconate‑5‑reductase | |||||