mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,361,550 | 0 | C | G | 28.0% | 110.7 / 15.6 | 50 | G221A (GGT→GCT) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.7% | 150.4 / 48.6 | 88 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 585,815 | 1 | . | T | 24.3% | 153.5 / 75.8 | 70 | intergenic (‑182/‑242) | ompT/pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| * | NC_000913 | 3,705,985 | 0 | T | C | 21.5% | 173.7 / 43.4 | 80 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 3,705,984 | 0 | T | G | 21.2% | 193.2 / 53.9 | 80 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 2,449,555 | 0 | C | T | 20.6% | 144.3 / 29.2 | 68 | W165* (TGG→TGA) | yfcO | DUF2544 family putative outer membrane protein |
| * | NC_000913 | 2,732,661 | 0 | T | C | 20.3% | 130.4 / 30.2 | 64 | K505E (AAA→GAA) | clpB | protein disaggregation chaperone |
| * | NC_000913 | 908,438 | 0 | T | C | 20.0% | 136.4 / 30.4 | 65 | N286S (AAT→AGT) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| Marginal new junction evidence (lowest skew 10 of 416 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 16 (0.260) | 9/186 | 7.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 15 (0.250) | 9/188 | 7.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 1207805 | 56 (0.870) | 7 (0.130) | 7/166 | 7.2 | 11.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (1.090) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 11 (0.190) | 8/180 | 7.2 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2768608 | 57 (0.880) | 8 (0.130) | 8/184 | 7.4 | 12.7% | intergenic (+35/‑57) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2768620 | 57 (0.950) | intergenic (+47/‑45) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 228744 | 41 (0.640) | 16 (0.260) | 8/186 | 7.5 | 29.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 14 (0.230) | 8/190 | 7.6 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 513338 | 66 (1.020) | 8 (0.140) | 7/178 | 7.7 | 11.5% | coding (763/1293 nt) | ybaT | putative amino acid transporter |
| ? | NC_000913 | = 513353 | 64 (1.110) | coding (778/1293 nt) | ybaT | putative amino acid transporter | |||||
| * | ? | NC_000913 | 430968 = | NA (NA) | 7 (0.120) | 7/184 | 7.9 | NA | noncoding (1/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 430993 = | NA (NA) | noncoding (26/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 1886815 = | 62 (0.960) | 7 (0.120) | 6/176 | 8.1 | 11.0% | intergenic (+5/+49) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
| ? | NC_000913 | 1886858 = | 58 (1.010) | intergenic (+48/+6) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D | |||||