Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,242,942	Δ66 bp	coding (510‑575/891 nt)	malG ←	maltose transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4242942	4243007	66	64 [0]	[1] 65	malG	maltose transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4242941	0 (0.000)	61 (1.020)	52/184	0.1	99.2%	coding (576/891 nt)	malG	maltose transporter subunit
	?	NC_000913	4243008 =	1 (0.020)					coding (509/891 nt)	malG	maltose transporter subunit

GCGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCC  >  NC_000913/4242843‑4243039                                                                                                   |                                                                                                   gCGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAa                                                                                                   >  2:90161‑M1/1‑99 (MQ=255) gCGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAa                                                                                                   <  2:1389476‑M1/100‑2 (MQ=255)  cGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAat                                                                                                  >  1:99707‑M1/1‑98 (MQ=255)  cGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACAATCCAGCGCA                                                                                                    >  1:1460333‑M1/1‑98 (MQ=255)   gATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatc                                                                                                 >  1:1555060‑M1/1‑97 (MQ=255)    aTAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcc                                                                                                <  1:600606‑M1/100‑5 (MQ=255)       aaCGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccac                                                                                             >  2:273980‑M1/1‑93 (MQ=255)       aaCGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccac                                                                                             >  2:1163672‑M1/1‑93 (MQ=255)        aCGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacc                                                                                            <  1:1163677‑M1/100‑9 (MQ=255)        aCGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacc                                                                                            >  2:171250‑M1/1‑92 (MQ=255)         cGACAGGATGAATACCACCGCCAGACTCGGTACTGACAGCGGCAACAGGACACGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacc                                                                                            >  2:119939‑M1/1‑91 (MQ=255)           aCAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccag                                                                                         <  1:73058‑M1/100‑12 (MQ=255)            cAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccaga                                                                                        >  1:424944‑M1/1‑88 (MQ=255)               gATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatac                                                                                     <  1:1082072‑M1/100‑16 (MQ=255)                 tGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgc                                                                                   >  1:905350‑M1/1‑83 (MQ=255)                 tGAATACCACCGCCAGAATCGGTACTGACAGCGGAAACAGGAAAAGGCGGCAGGACTGCCACGCTGTCACACCATCCAGCGCAatcccccccagatacgc                                                                                   <  2:130394‑M1/100‑18 (MQ=255)                  gAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacg                                                                                    >  2:620063‑M1/1‑82 (MQ=255)                   aaTACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcga                                                                                 >  1:1244720‑M1/1‑81 (MQ=255)                      accaccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaa                                                                              <  1:344387‑M1/100‑23 (MQ=255)                           cGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacg                                                                         >  1:197760‑M1/1‑73 (MQ=255)                           cGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacg                                                                         <  1:840092‑M1/100‑28 (MQ=255)                           cGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacg                                                                         >  1:586084‑M1/1‑73 (MQ=255)                             ccAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgcc                                                                       >  2:1350726‑M1/1‑71 (MQ=255)                              cAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccg                                                                      >  1:1416593‑M1/1‑70 (MQ=255)                               aGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgc                                                                     >  1:546834‑M1/1‑69 (MQ=255)                                         cTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCAAGCGCAatcccacccagaaacgcgaaaattacgccg                                                                      >  2:1491488‑M1/1‑59 (MQ=255)                                          tGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattc                                                          >  1:266688‑M1/1‑58 (MQ=255)                                          tGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattc                                                          <  2:1327963‑M1/100‑43 (MQ=255)                                           gACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgcaaattacgccgccgtgactataca                                                         >  2:555037‑M1/1‑57 (MQ=255)                                            aCAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcag                                                        <  1:657615‑M1/100‑45 (MQ=255)                                                       aGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatg                                             <  2:1499378‑M1/100‑56 (MQ=255)                                                        ggACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatgg                                            >  1:579978‑M1/1‑44 (MQ=255)                                                        ggACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatgg                                            <  2:368531‑M1/100‑57 (MQ=255)                                                        ggACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatgg                                            >  1:13067‑M1/1‑44 (MQ=255)                                                           cAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaat                                         <  1:119939‑M1/100‑60 (MQ=255)                                                           cAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaat                                         >  2:273591‑M1/1‑41 (MQ=255)                                                            aaGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatg                                        <  1:810885‑M1/100‑61 (MQ=255)                                                             aGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgt                                       <  2:1379169‑M1/100‑62 (MQ=255)                                                                 ggAAGGCCTGCCGCGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtact                                    <  2:574431‑M1/99‑65 (MQ=255)                                                                 ggAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactc                                   <  2:13067‑M1/100‑66 (MQ=255)                                                                  gAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactca                                  <  1:171250‑M1/100‑67 (MQ=255)                                                                    aGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacc                                <  1:105284‑M1/100‑69 (MQ=255)                                                                     ggCCTGCCACGGTGTCGCACCATCCAGCGCAgtcccacccagatacgcgaaaattacgccgccgtgagtattcatgccaatgaatggaatgtactcaccc                               <  2:758787‑M1/100‑70 (MQ=255)                                                                      gCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcaccca                              >  1:312824‑M1/1‑30 (MQ=255)                                                                      gCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcaccca                              >  1:1337574‑M1/1‑30 (MQ=255)                                                                      gCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcaccca                              >  2:56820‑M1/1‑30 (MQ=255)                                                                           ccACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgcacattacgccgccctgagtactcacgccaatgaaaggaatgtactcacccagacg                          >  2:697606‑M1/1‑25 (MQ=255)                                                                             aCGGTGTCGCAGCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgcatggaatgtactcacccagacgatc                       <  2:457252‑M1/100‑78 (MQ=255)                                                                             aCGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatc                       <  2:546833‑M1/100‑78 (MQ=255)                                                                              cGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatca                      <  1:338047‑M1/100‑79 (MQ=255)                                                                              cGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatca                      <  2:1323036‑M1/100‑79 (MQ=255)                                                                               ggTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaa                     <  2:757107‑M1/100‑80 (MQ=255)                                                                                 tgtCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaac                   <  1:821802‑M1/100‑82 (MQ=255)                                                                                    cGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaac                <  2:834538‑M1/100‑85 (MQ=255)                                                                                     gCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtatgcaggccaatgaatggaatgtactcacccagacgatcaaacaac                >  1:545687‑M1/1‑15 (MQ=255)                                                                                     gCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtcactcctcagcccaatgactggaatgtactcacccagacgatcaaac                   >  2:623147‑M1/1‑15 (MQ=255)                                                                                      cACCATCCAGCGCAatcccacccagatacgcgaaaattacgcctccgttagtattcaagccaattaatggaatgtactcacccagacgatcaaacaac                >  2:231852‑M1/1‑14 (MQ=255)                                                                                        ccATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcat            <  2:424943‑M1/100‑89 (MQ=255)                                                                                          aTCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatac          <  2:586082‑M1/100‑91 (MQ=255)                                                                                          aTCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatac          <  2:197760‑M1/100‑91 (MQ=255)                                                                                           tCCAGCGCCatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcataca         <  2:1384622‑M1/100‑92 (MQ=255)                                                                                            ccAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaa        >  1:28772‑M1/1‑8 (MQ=255)                                                                                                  cAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgac  <  1:477839‑M1/100‑99 (MQ=255)                                                                                                  cAatcccacccagatacgagaaaattacgccgccgtgagtattcaggccaaagaatggaatatacgcacccagacgatcaaacaacggatacaacgcgac  >  2:312220‑M1/1‑2 (MQ=255)                                                                                                   |                                                                                                   GCGATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCC  >  NC_000913/4242843‑4243039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑