Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,242,942	Δ66 bp	coding (510‑575/891 nt)	malG ←	maltose transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4242942	4243007	66	64 [0]	[1] 65	malG	maltose transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4242941	0 (0.000)	61 (1.020)	52/184	0.1	99.2%	coding (576/891 nt)	malG	maltose transporter subunit
	?	NC_000913	4243008 =	1 (0.020)					coding (509/891 nt)	malG	maltose transporter subunit

AAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGACCA  >  NC_000913/4242909‑4243107                                                                                                    |                                                                                                    gcgataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaa                                                                                                     >  2:90161‑M2/100‑100 (MQ=255) gcgataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaa                                                                                                     <  2:1389476‑M2/1‑1 (MQ=255)  cgataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaAt                                                                                                    >  1:99707‑M2/99‑100 (MQ=255)   gataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATc                                                                                                   >  1:1555060‑M2/98‑100 (MQ=255)    ataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcc                                                                                                  <  1:600606‑M2/4‑1 (MQ=255)       aacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccac                                                                                               >  2:273980‑M2/94‑100 (MQ=255)       aacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccac                                                                                               >  2:1163672‑M2/94‑100 (MQ=255)        acgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccacc                                                                                              <  1:1163677‑M2/8‑1 (MQ=255)        acgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccacc                                                                                              >  2:171250‑M2/93‑100 (MQ=255)         cgacaggatgaataccaccgccagactcggtactgacagcggcaacaggacacggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccacc                                                                                              >  2:119939‑M2/92‑99 (MQ=255)           acaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAg                                                                                           <  1:73058‑M2/11‑1 (MQ=255)            caggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGa                                                                                          >  1:424944‑M2/89‑100 (MQ=255)               gatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATAc                                                                                       <  1:1082072‑M2/15‑1 (MQ=255)                 tgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATAcgc                                                                                     >  1:905350‑M2/84‑100 (MQ=255)                 tgaataccaccgccagaatcggtactgacagcggaaacaggaaaaggcggcaggactgccacgctgtcacaccatccagcgcaATCCCCCCCAGATAcgc                                                                                     <  2:130394‑M2/17‑1 (MQ=255)                  gaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATAcg                                                                                      >  2:620063‑M2/83‑98 (MQ=255)                   aataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGa                                                                                   >  1:1244720‑M2/82‑100 (MQ=255)                      accaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGaaaa                                                                                <  1:344387‑M2/22‑1 (MQ=255)                           cgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcg                                                                           >  1:197760‑M2/74‑100 (MQ=255)                           cgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcg                                                                           <  1:840092‑M2/27‑1 (MQ=255)                           cgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcg                                                                           >  1:586084‑M2/74‑100 (MQ=255)                             ccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcgcc                                                                         >  2:1350726‑M2/72‑100 (MQ=255)                              cagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcgccg                                                                        >  1:1416593‑M2/71‑100 (MQ=255)                               agaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTAcgccgc                                                                       >  1:546834‑M2/70‑100 (MQ=255)                                      cttcttCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACACCGCCGtaa                                                                  >  2:287145/1‑96 (MQ=255)                                         ctgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatcaagcgcaATCCCACCCAGAAACGCGAAAATTAcgccg                                                                        >  2:1491488‑M2/60‑89 (MQ=255)                                          tgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTc                                                            >  1:266688‑M2/59‑100 (MQ=255)                                          tgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTc                                                            <  2:1327963‑M2/42‑1 (MQ=255)                                           gacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGCAAATTACGCCGCCGTGACTATACa                                                           >  2:555037‑M2/58‑100 (MQ=255)                                            acagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAg                                                          <  1:657615‑M2/44‑1 (MQ=255)                                                       aggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCaatgaatg                                               <  2:1499378‑M2/55‑1 (MQ=255)                                                        ggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatgg                                              >  1:579978‑M2/45‑100 (MQ=255)                                                        ggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatgg                                              <  2:368531‑M2/56‑1 (MQ=255)                                                        ggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatgg                                              >  1:13067‑M2/45‑100 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaat                                           <  1:119939‑M2/59‑1 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaat                                           >  2:273591‑M2/42‑100 (MQ=255)                                                            aaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaatg                                          <  1:810885‑M2/60‑1 (MQ=255)                                                             aggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGt                                         <  2:1379169‑M2/61‑1 (MQ=255)                                                                 ggaaggcctgccgcggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACt                                      <  2:574431‑M2/64‑1 (MQ=255)                                                                 ggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTc                                     <  2:13067‑M2/65‑1 (MQ=255)                                                                  gaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCa                                    <  1:171250‑M2/66‑1 (MQ=255)                                                                    aggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCAcc                                  <  1:105284‑M2/68‑1 (MQ=255)                                                                     ggcctgccacggtgtcgcaccatccagcgcaGTCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCATGCCAATGAATGGAATGTACTCAccc                                 <  2:758787‑M2/69‑1 (MQ=255)                                                                      gcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCa                                >  1:312824‑M2/31‑100 (MQ=255)                                                                      gcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCa                                >  1:1337574‑M2/31‑100 (MQ=255)                                                                      gcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCa                                >  2:56820‑M2/31‑100 (MQ=255)                                                                           ccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGCACATTACGCCGCCCTGAGTACTCACGCCAATGAAAGGAATGTACTCACCCAGACg                            >  2:697606‑M2/26‑99 (MQ=255)                                                                             acggtgtcgcagcatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGCATGGAATGTACTCACCCAGACGATc                         <  2:457252‑M2/77‑1 (MQ=255)                                                                             acggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATc                         <  2:546833‑M2/77‑1 (MQ=255)                                                                              cggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCa                        <  1:338047‑M2/78‑1 (MQ=255)                                                                              cggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCa                        <  2:1323036‑M2/78‑1 (MQ=255)                                                                               ggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCaa                       <  2:757107‑M2/79‑1 (MQ=255)                                                                                 tgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAaac                     <  1:821802‑M2/81‑1 (MQ=255)                                                                                    cgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAaacaac                  <  2:834538‑M2/84‑1 (MQ=255)                                                                                     gcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATGCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAaacaac                  >  1:545687‑M2/16‑99 (MQ=255)                                                                                     gcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTCACTCCTCAGCCCAATGACTGGAATGTACTCACCCAGACGATCAaac                     >  2:623147‑M2/16‑96 (MQ=255)                                                                                      caccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCTCCGTTAGTATTCAAGCCAATTAATGGAATGTACTCACCCAGACGATCAaacaac                  >  2:231852‑M2/15‑98 (MQ=255)                                                                                        ccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCAt              <  2:424943‑M2/88‑1 (MQ=255)                                                                                          atccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATAc            <  2:586082‑M2/90‑1 (MQ=255)                                                                                          atccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATAc            <  2:197760‑M2/90‑1 (MQ=255)                                                                                           tccagcgccATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACa           <  2:1384622‑M2/91‑1 (MQ=255)                                                                                            ccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACaa          >  1:28772‑M2/9‑100 (MQ=255)                                                                                                  caATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGAc    <  1:477839‑M2/98‑1 (MQ=255)                                                                                                  caATCCCACCCAGATACGAGAAAATTACGCCGCCGTGAGTATTCAGGCCAAAGAATGGAATATACGCACCCAGACGATCAAACAACGGATACAACGCGAc    >  2:312220‑M2/3‑100 (MQ=255)                                                                                                    aTCCCACCCAGCTACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCACTGAAGGGAATGTACTCACCCAGACGATCCAACAACGCATACAACGCGACCa  >  2:1002816/1‑100 (MQ=255)                                                                                                    |                                                                                                    AAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGACCA  >  NC_000913/4242909‑4243107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑