mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,781,152 | 0 | A | G | 22.8% | 148.5 / 17.1 | 79 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 2,185,875 | 0 | G | A | 20.2% | 277.2 / 10.0 | 126 | intergenic (‑79/‑42) | rcnR/rcnA | transcriptional repressor of rcnA/membrane protein conferring nickel and cobalt resistance |
| Marginal new junction evidence (lowest skew 10 of 193 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3328172 = | 132 (1.090) | 8 (0.070) | 7/178 | 13.2 | 6.0% | intergenic (+89/+67) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| ? | NC_000913 | 3328195 = | 130 (1.200) | intergenic (+112/+44) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor | |||||
| * | ? | NC_000913 | 2085653 = | 145 (1.200) | 7 (0.060) | 7/180 | 13.3 | 5.2% | intergenic (‑128/+51) | yeeE/plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| ? | NC_000913 | 2085687 = | 121 (1.100) | intergenic (‑162/+17) | yeeE/plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity | |||||
| * | ? | NC_000913 | 2635831 = | 118 (0.980) | 6 (0.060) | 6/172 | 13.5 | 5.5% | intergenic (‑17/+53) | yfgJ/der | DUF1407 family protein/GTPase; multicopy suppressor of ftsJ |
| ? | NC_000913 | 2635863 = | 105 (1.000) | intergenic (‑49/+21) | yfgJ/der | DUF1407 family protein/GTPase; multicopy suppressor of ftsJ | |||||
| * | ? | NC_000913 | = 2600973 | 125 (1.030) | 6 (0.050) | 6/184 | 14.1 | 4.9% | intergenic (+25/‑228) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit |
| ? | NC_000913 | = 2600983 | 119 (1.060) | intergenic (+35/‑218) | bcp/hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit | |||||
| * | ? | NC_000913 | 3423823 = | NA (NA) | 7 (0.060) | 6/186 | 14.2 | 4.9% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946688 | 144 (1.190) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 7 (0.060) | 6/186 | 14.2 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 52 (0.430) | 7 (0.060) | 6/186 | 14.2 | 12.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 3852834 = | 116 (0.960) | 5 (0.050) | 5/176 | 14.4 | 4.5% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852867 = | 109 (1.020) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | 3181589 = | NA (NA) | 5 (0.050) | 5/176 | 14.4 | NA | intergenic (+8/+30) | ygiC/ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| ? | NC_000913 | 3181615 = | NA (NA) | intergenic (+34/+4) | ygiC/ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase | |||||
| * | ? | NC_000913 | = 134766 | 125 (1.030) | 6 (0.060) | 5/176 | 14.4 | 5.3% | intergenic (+16/+22) | yacL/speD | UPF0231 family protein/S‑adenosylmethionine decarboxylase |
| ? | NC_000913 | = 134772 | 104 (0.970) | intergenic (+22/+16) | yacL/speD | UPF0231 family protein/S‑adenosylmethionine decarboxylase | |||||