mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,016,179 | T→A | intergenic (+30/‑33) | nlpD → / → rpoS | murein hydrolase activator NlpD/RNA polymerase sigma factor RpoS |
| RA | 2,687,814 | G→A | S21N (AGC→AAC) | purB → | adenylosuccinate lyase |
| JC JC | 2,993,356 | Δ6 bp :: repeat_region (+) +4 bp :: Δ3 bp | coding (338‑341/537 nt) | rcdA ← | DNA‑binding transcriptional regulator |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| JC | 3,703,415 | Δ143 bp | coding (337‑479/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 225528 | 19 (0.040) | 748 (1.430) | 248/300 | 0.0 | 97.5% | intergenic (‑131/+668) | gadE/hdeD | transcriptional regulator GadE/protein HdeD |
| ? | DH1 | 1586746 = | NA (NA) | noncoding (1/1198 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2770658 | 19 (0.040) | 530 (1.010) | 237/300 | 0.0 | 96.5% | coding (49/144 nt) | ECDH1_RS13775 | hypothetical protein |
| ? | DH1 | 2788748 = | NA (NA) | noncoding (6/1206 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3970034 = | 17 (0.030) | 521 (1.060) | 217/282 | 0.0 | 96.8% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 19 (0.040) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 18 (0.030) | 582 (1.180) | 237/282 | 0.0 | 97.0% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 19 (0.040) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||