mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 36.0% | 260.1 / 154.5 | 119 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,169,577 | 0 | T | G | 30.0% | 314.8 / 88.8 | 317 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 936,297 | 0 | A | G | 29.7% | 329.4 / 157.7 | 190 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,448,526 | 0 | A | C | 27.9% | 778.0 / 114.3 | 430 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 936,293 | 0 | T | . | 27.2% | 388.8 / 153.0 | 156 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,169,548 | 0 | G | T | 26.2% | 607.4 / 71.6 | 349 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 613,770 | 0 | C | A | 26.1% | 362.7 / 25.2 | 262 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,184,585 | 0 | C | A | 25.0% | 406.2 / 51.3 | 168 | intergenic (+8/‑30) | ECDH1_RS15795/ECDH1_RS15800 | tRNA‑Gln/tRNA‑TERM |
| * | DH1 | 2,326,287 | 0 | G | T | 24.9% | 1031.5 / 97.1 | 511 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 2,591,513 | 0 | T | G | 24.5% | 251.5 / 37.0 | 226 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 1,065,605 | 0 | A | T | 24.3% | 400.9 / 130.7 | 247 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 1,358,824 | 0 | C | A | 23.1% | 791.3 / 53.6 | 346 | intergenic (+8/‑32) | ECDH1_RS06705/ECDH1_RS06710 | tRNA‑Ala/tRNA‑Ala |
| * | DH1 | 3,906,837 | 0 | C | G | 22.8% | 197.6 / 15.2 | 112 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 1,647,669 | 0 | A | C | 22.5% | 308.7 / 31.2 | 233 | intergenic (+248/+125) | dusC/ECDH1_RS08050 | tRNA dihydrouridine synthase DusC/hypothetical protein |
| * | DH1 | 1,065,618 | 0 | A | G | 22.4% | 464.3 / 149.3 | 283 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 3,448,523 | 0 | A | C | 22.4% | 955.7 / 71.2 | 430 | intergenic (‑83/+73) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 2,965,906 | 0 | T | G | 22.4% | 266.8 / 28.7 | 205 | intergenic (+139/‑356) | aqpZ/ybjE | aquaporin/transporter |
| * | DH1 | 3,447,403 | 0 | A | C | 21.9% | 850.8 / 84.4 | 403 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 1,065,614 | 0 | A | G | 21.7% | 438.4 / 134.9 | 274 | intergenic (+49/‑14) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,720 | 0 | C | G | 21.5% | 193.4 / 24.2 | 157 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 364 (0.690) | 209 (0.450) | 128/268 | 6.8 | 40.3% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 294 (0.630) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 303 (0.640) | 166 (0.360) | 126/268 | 7.2 | 35.6% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3183985 = | 509 (0.970) | 109 (0.230) +GATTGTTTCTTC |
45/276 | 32.9 | 26.1% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 161 (0.310) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | 1355843 = | 127 (0.240) | 107 (0.210) +C |
44/298 | 36.0 | 30.0% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 375 (0.720) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 2590941 | 488 (0.930) | 50 (0.110) | 28/260 | 40.1 | 15.1% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 138 (0.300) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355843 = | 127 (0.240) | 96 (0.180) +C |
36/298 | 40.1 | 21.6% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3100565 | 576 (1.100) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355843 = | 127 (0.240) | 222 (0.430) +C |
36/298 | 40.1 | 63.8% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355966 = | 188 (0.360) | 61 (0.120) +CTTC |
31/292 | 42.2 | 18.2% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 375 (0.720) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1355505 | 570 (1.090) | 35 (0.080) | 24/260 | 42.7 | 8.4% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 267 (0.590) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1519281 | 333 (0.640) | 33 (0.070) +AACCTTCTAATT |
24/276 | 44.7 | 9.7% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 333 (0.640) | coding (787/900 nt) | yfaD | transposase | |||||