breseq  version 0.28.1  revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
JC JC 490,607 Δ4 bp :: repeat_region (+) +9 bp :: Δ1 bp coding (3102‑3110/3801 nt) yhdP → DUF3971 domain‑containing protein
RA 635,638 A→C F118L (TTT→TTG)  yqjA ← hypothetical protein
MC JC 2,201,912 Δ3,035 bp [pntA]–tqsA [pntA], pntB, tqsA
RA 2,571,230 C→A R67S (CGC→AGC)  cls → cardiolipin synthase A
JC JC 2,991,627 Δ3 bp :: repeat_region (–) +4 bp :: Δ3 bp coding (328‑331/1686 nt) ybjL → transporter
JC 3,203,934 (ACCAAAGGTATAACCGGCAAAGTATTGCCG)1→2 coding (475/708 nt) ybeR ← hypothetical protein
RA 3,668,924 (T)5→6 pseudogene (353/455 nt) lpxA ← hydroxymyristoyl‑ACP dehydratase
RA 3,701,787 Δ1 bp coding (2107/2244 nt) fhuA ← ferrichrome‑iron receptor
JC 4,493,677 Δ12 bp coding (557‑568/1641 nt) ubiB ← ubiquinone biosynthesis protein UbiB
RA 4,547,815 T→C Y80C (TAC→TGC)  rho ← transcription termination factor Rho
JC 4,549,890 Δ6 bp coding (1051‑1056/1266 nt) rhlB → ATP‑dependent RNA helicase RhlB

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? DH1 3970034 =9 (0.030)382 (1.240) 198/282 0.0 97.9% intergenic (‑120/‑94) fimA/ECDH1_RS19620 type‑1 fimbrial protein, A chain/hypothetical protein
?DH1 3970348 = 8 (0.030)intergenic (+32/+48) ECDH1_RS19620/fimE hypothetical protein/tyrosine recombinase
* ? DH1 = 39700429 (0.030)404 (1.310) 216/282 0.0 98.0% intergenic (‑128/‑86) fimA/ECDH1_RS19620 type‑1 fimbrial protein, A chain/hypothetical protein
?DH1 = 3970338 8 (0.030)intergenic (+22/+58) ECDH1_RS19620/fimE hypothetical protein/tyrosine recombinase