mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 51.6% | 105.3 / 169.1 | 63 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,293 | 0 | T | . | 38.9% | 139.9 / 108.8 | 79 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,448,526 | 0 | A | C | 33.0% | 451.2 / 97.6 | 283 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 613,770 | 0 | C | A | 32.8% | 149.7 / 31.9 | 148 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 936,278 | 1 | . | T | 32.7% | 109.2 / 94.6 | 55 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,297 | 0 | A | G | 31.7% | 204.6 / 108.3 | 125 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,184,585 | 0 | C | A | 30.8% | 164.3 / 37.4 | 107 | intergenic (+8/‑30) | ECDH1_RS15795/ECDH1_RS15800 | tRNA‑Gln/tRNA‑TERM |
| * | DH1 | 2,169,548 | 0 | G | T | 30.8% | 286.6 / 45.3 | 157 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 613,597 | 0 | G | C | 30.4% | 168.5 / 43.2 | 167 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,169,577 | 0 | T | G | 30.2% | 167.4 / 36.5 | 144 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 1,065,618 | 0 | A | G | 28.0% | 167.7 / 81.1 | 117 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,720 | 0 | C | G | 27.5% | 128.4 / 39.4 | 125 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| * | DH1 | 2,591,513 | 0 | T | G | 27.5% | 124.3 / 33.7 | 170 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 3,906,837 | 0 | C | G | 27.0% | 106.1 / 10.8 | 70 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 3,448,520 | 0 | A | C | 26.0% | 591.4 / 52.2 | 283 | intergenic (‑80/+76) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 2,591,441 | 0 | G | C | 25.6% | 187.6 / 23.2 | 133 | intergenic (+207/+53) | ECDH1_RS12810/ECDH1_RS12815 | tRNA‑Tyr/hypothetical protein |
| * | DH1 | 4,122,124 | 0 | C | A | 25.3% | 267.8 / 11.5 | 175 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| * | DH1 | 3,448,523 | 0 | A | C | 25.1% | 584.5 / 48.4 | 283 | intergenic (‑83/+73) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 3,447,403 | 0 | A | C | 25.0% | 497.7 / 52.0 | 252 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 1,647,669 | 0 | A | C | 23.7% | 180.8 / 15.7 | 150 | intergenic (+248/+125) | dusC/ECDH1_RS08050 | tRNA dihydrouridine synthase DusC/hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 1355966 = | 130 (0.400) | 97 (0.300) +CTTC |
42/292 | 23.4 | 36.8% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 213 (0.650) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 130 (0.400) | 70 (0.220) +CTTC |
39/292 | 24.6 | 21.7% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3100565 | 388 (1.180) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 130 (0.400) | 144 (0.450) +CTTC |
39/292 | 24.6 | 53.2% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 2668875 = | 270 (0.920) | 36 (0.120) | 31/268 | 26.1 | 11.8% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1519281 | 216 (0.660) | 46 (0.150) +AACCTTCTAATT |
30/276 | 27.4 | 18.8% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 216 (0.660) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | = 1355505 | 316 (0.960) | 50 (0.180) | 27/260 | 27.4 | 19.1% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 151 (0.530) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355844 = | 82 (0.250) | 66 (0.200) +C |
32/298 | 28.4 | 31.1% | intergenic (‑45/+2) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 212 (0.650) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 130 (0.400) | 88 (0.270) +CTC |
31/294 | 28.6 | 34.4% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 213 (0.650) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 3099328 | 291 (0.890) | 41 (0.140) | 24/260 | 29.1 | 16.9% | noncoding (54/268 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 151 (0.530) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1065291 | 317 (0.970) | 35 (0.120) | 23/260 | 29.7 | 12.9% | intergenic (+1/‑198) | ECDH1_RS05240/ECDH1_RS05245 | tRNA‑Arg/tRNA‑Arg |
| ? | DH1 | 1065841 = | 197 (0.690) | intergenic (+137/‑62) | ECDH1_RS05250/ECDH1_RS05255 | tRNA‑Arg/tRNA‑Arg | |||||