mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,213,458 | 0 | C | A | 54.4% | 36.5 / inf | 388 | R396L (CGC→CTC) | yehU | inner membrane putative sensory kinase in two‑component system with YehT |
| * | NC_000913 | 2,312,578 | 0 | G | T | 52.1% | 22.3 / inf | 410 | R58S (CGT→AGT) | ompC | outer membrane porin protein C |
| * | NC_000913 | 1,189,808 | 0 | G | T | 52.1% | 52.9 / inf | 341 | R214S (CGC→AGC) | phoP | response regulator in two‑component regulatory system with PhoQ |
| * | NC_000913 | 4,186,425 | 0 | C | T | 51.5% | 44.6 / inf | 424 | P359L (CCA→CTA) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 1,910,654 | 0 | G | T | 51.0% | 52.9 / inf | 298 | A127S (GCA→TCA) | yebQ | putative transporter |
| * | NC_000913 | 1,940,462 | 0 | G | T | 50.5% | 122.5 / inf | 377 | P392T (CCG→ACG) | mepM | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| * | NC_000913 | 3,310,461 | 0 | C | A | 50.5% | 141.3 / inf | 382 | E236D (GAG→GAT) | pnp | polynucleotide phosphorylase/polyadenylase |
| * | NC_000913 | 2,396,740 | 0 | C | A | 50.1% | 38.7 / inf | 386 | G235C (GGT→TGT) | nuoH | NADH:ubiquinone oxidoreductase, membrane subunit H |
| * | NC_000913 | 2,456,163 | 0 | C | A | 49.8% | 142.3 / inf | 515 | intergenic (‑517/+164) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| * | NC_000913 | 2,063,069 | 0 | C | A | 49.0% | 118.0 / inf | 410 | P85P (CCG→CCT) | ldtA | L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 736,686 | 0 | G | T | 48.5% | 137.6 / inf | 414 | intergenic (+2/‑139) | ybfQ/ybfL | pseudogene, H repeat‑associated protein/pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| * | NC_000913 | 4,183,225 | 0 | G | C | 48.5% | 74.4 / inf | 455 | V661L (GTA→CTA) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 1,151,748 | 0 | T | C | 48.4% | 47.2 / inf | 381 | M45T (ATG→ACG) | acpP | acyl carrier protein (ACP) |
| * | NC_000913 | 2,640,117 | 0 | G | T | 48.2% | 152.0 / inf | 394 | R153R (CGC→CGA) | hisS | histidyl tRNA synthetase |
| * | NC_000913 | 3,642,902 | 0 | C | A | 48.1% | 166.4 / inf | 400 | A77A (GCG→GCT) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| * | NC_000913 | 4,105,432 | 0 | C | A | 48.1% | 188.6 / inf | 421 | R80L (CGC→CTC) | cpxR | response regulator in two‑component regulatory system with CpxA |
| * | NC_000913 | 1,961,240 | 0 | G | T | 48.1% | 166.4 / inf | 339 | L393L (CTG→CTT) | argS | arginyl‑tRNA synthetase |
| * | NC_000913 | 3,653,367 | 0 | C | A | 48.0% | 167.8 / inf | 519 | pseudogene (137/483 nt) | yhiS | pseudogene |
| * | NC_000913 | 2,037,101 | 0 | C | A | 48.0% | 230.4 / inf | 467 | R351L (CGA→CTA) | yedV | putative sensory kinase in two‑component regulatory system with YedW |
| * | NC_000913 | 261,048 | 0 | G | T | 47.4% | 205.6 / inf | 392 | A221S (GCT→TCT) | proB | gamma‑glutamate kinase |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 687851 = | NA (NA) | 218 (0.530) | 139/300 | 3.9 | 50.1% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 889537 | 217 (0.530) | coding (283/1686 nt) | ybjL | putative transporter | |||||
| * | ? | NC_000913 | 2413601 = | 238 (0.580) | 222 (0.540) | 136/300 | 4.2 | 48.3% | coding (132/1203 nt) | ackA | acetate kinase A and propionate kinase 2 |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 196 (0.480) | 134/300 | 4.4 | 48.9% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1307993 = | 205 (0.500) | coding (653/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | NC_000913 | = 1308001 | 210 (0.510) | 180 (0.440) | 126/300 | 5.4 | 46.2% | coding (645/1461 nt) | clsA | cardiolipin synthase 1 |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 180 (0.440) | 125/300 | 5.5 | 46.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1308001 | 210 (0.510) | coding (645/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 193 (0.470) | 119/300 | 6.4 | 44.8% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2413601 = | 238 (0.580) | coding (132/1203 nt) | ackA | acetate kinase A and propionate kinase 2 | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 183 (0.440) | 116/300 | 6.8 | 47.2% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1307993 = | 205 (0.500) | coding (653/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | NC_000913 | 781369 = | 263 (0.640) | 144 (0.360) +GAAG |
63/292 | 17.0 | 39.9% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 183 (0.440) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 301 (0.730) | 217 (0.540) +GAAG |
62/292 | 17.3 | 48.0% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 183 (0.440) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 511 (1.240) | 120 (0.300) +GAAG |
62/292 | 17.3 | 26.2% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 183 (0.440) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||