mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 222 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633109 | 654 (1.310) | 11 (0.020) | 6/276 | NT | 1.7% | noncoding (19/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633145 | 638 (1.290) | noncoding (55/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4628743 = | NA (NA) | 10 (0.020) | 4/264 | NT | 1.8% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628776 = | 553 (1.170) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4613554 | 501 (1.000) | 5 (0.010) | 4/270 | NT | 0.99% | coding (74/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | = 4613578 | 516 (1.070) | coding (98/780 nt) | yjjV | putative DNase | |||||
| * | ? | NC_000913 | 4558302 = | 498 (1.000) | 6 (0.010) | 4/254 | NT | 1.4% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 421 (0.920) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 4534139 | 455 (0.910) | 6 (0.010) | 5/258 | NT | 1.3% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 464 (1.000) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4527773 = | 489 (0.980) | 10 (0.020) | 6/262 | NT | 2.2% | coding (208/432 nt) | sgcA | putative phosphotransferase enzyme IIA component |
| ? | NC_000913 | 4527805 = | 434 (0.920) | coding (176/432 nt) | sgcA | putative phosphotransferase enzyme IIA component | |||||
| * | ? | NC_000913 | = 4516889 | 587 (1.180) | 11 (0.020) | 7/276 | NT | 1.8% | coding (829/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | = 4516925 | 611 (1.230) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | 4497494 = | 555 (1.110) | 3 (0.010) | 3/266 | NT | 0.57% | pseudogene (820/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | 4497532 = | 514 (1.080) | pseudogene (858/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | = 4455824 | 513 (1.030) | 5 (0.010) | 4/270 | NT | 0.99% | coding (40/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | NC_000913 | = 4455855 | 500 (1.030) | coding (71/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
| * | ? | NC_000913 | = 4412107 | 465 (0.930) | 5 (0.010) | 4/266 | NT | 1.1% | coding (129/399 nt) | yjfL | UPF0719 family inner membrane protein |
| ? | NC_000913 | = 4412139 | 477 (1.000) | coding (161/399 nt) | yjfL | UPF0719 family inner membrane protein | |||||