mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583137 | 145 (0.830) | 6 (0.040) | 5/266 | NT | 3.8% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 163 (0.980) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4534139 | 157 (0.900) | 3 (0.020) | 3/258 | NT | 2.0% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 151 (0.940) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4381930 = | 226 (1.300) | 3 (0.020) | 3/262 | NT | 1.5% | coding (389/1809 nt) | frdA | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| ? | NC_000913 | 4381970 = | 192 (1.170) | coding (349/1809 nt) | frdA | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit | |||||
| * | ? | NC_000913 | 4143394 = | 220 (1.260) | 4 (0.020) | 3/266 | NT | 1.9% | coding (865/1080 nt) | frwC | putative enzyme IIC component of PTS |
| ? | NC_000913 | 4143419 = | 203 (1.220) | coding (890/1080 nt) | frwC | putative enzyme IIC component of PTS | |||||
| * | ? | NC_000913 | 3932697 = | 221 (1.270) | 5 (0.030) | 3/264 | NT | 2.6% | coding (1382/1869 nt) | kup | potassium transporter |
| ? | NC_000913 | 3932769 = | 161 (0.980) | coding (1454/1869 nt) | kup | potassium transporter | |||||
| * | ? | NC_000913 | = 3908393 | 204 (1.170) | 4 (0.020) | 4/264 | NT | 2.0% | noncoding (7/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3908404 | NA (NA) | noncoding (18/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2524480 = | 172 (0.990) | 4 (0.020) | 3/264 | NT | 2.3% | coding (399/834 nt) | xapA | purine nucleoside phosphorylase 2; nicotinamide 1‑beta‑D‑riboside synthase |
| ? | NC_000913 | 2524535 = | 171 (1.040) | coding (344/834 nt) | xapA | purine nucleoside phosphorylase 2; nicotinamide 1‑beta‑D‑riboside synthase | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 4 (0.020) | 4/278 | NT | 2.8% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2476050 | 141 (0.810) | coding (178/306 nt) | yfdT | CPS‑53 (KpLE1) prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1570598 = | 130 (0.750) | 7 (0.050) +CCGTTACCGTTAAAC |
5/248 | NT | 4.2% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666176 = | 226 (1.300) | intergenic (‑366/+4) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 8 (0.050) | 4/266 | NT | 5.0% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 159 (0.910) | noncoding (525/1196 nt) | IS5 | repeat region | |||||