mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4634484 | 180 (1.050) | 5 (0.030) | 3/270 | NT | 2.7% | coding (827/870 nt) | rob | right oriC‑binding transcriptional activator, AraC family |
| ? | NC_000913 | = 4634526 | 192 (1.150) | coding (785/870 nt) | rob | right oriC‑binding transcriptional activator, AraC family | |||||
| * | ? | NC_000913 | = 4534139 | 176 (1.020) | 4 (0.030) | 3/258 | NT | 2.3% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 179 (1.120) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4434547 | 198 (1.150) | 5 (0.030) | 4/264 | NT | 2.6% | noncoding (52/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4434565 | NA (NA) | noncoding (70/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4347367 = | 171 (0.990) | 3 (0.020) | 3/260 | NT | 1.9% | intergenic (‑41/+37) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | NC_000913 | 4347395 = | 149 (0.930) | intergenic (‑69/+9) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | NC_000913 | = 4285020 | 214 (1.240) | 3 (0.020) | 3/272 | NT | 1.3% | coding (194/315 nt) | yjcH | DUF485 family inner membrane protein |
| ? | NC_000913 | = 4285040 | 238 (1.410) | coding (174/315 nt) | yjcH | DUF485 family inner membrane protein | |||||
| * | ? | NC_000913 | 4096011 = | 166 (0.970) | 3 (0.020) | 3/266 | NT | 2.0% | coding (1438/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | 4096045 = | 140 (0.850) | coding (1404/1470 nt) | rhaB | rhamnulokinase | |||||
| * | ? | NC_000913 | = 4094350 | 214 (1.240) | 6 (0.050) | 6/196 | NT | 3.6% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 174 (1.440) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | = 3815858 | 201 (1.170) | 4 (0.030) | 3/258 | NT | 2.1% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 194 (1.220) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
| * | ? | NC_000913 | = 2985877 | 184 (1.070) | 4 (0.020) | 4/264 | NT | 2.2% | coding (31/1230 nt) | yqeG | putative transporter |
| ? | NC_000913 | = 2985881 | 186 (1.140) | coding (35/1230 nt) | yqeG | putative transporter | |||||
| * | ? | NC_000913 | 2819340 = | 150 (0.870) | 3 (0.020) | 3/260 | NT | 2.0% | intergenic (‑194/+41) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase |
| ? | NC_000913 | 2819367 = | 147 (0.910) | intergenic (‑221/+14) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase | |||||