mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 56.9% | 8.3 / 53.8 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 225,466 | 0 | C | G | 27.3% | 27.1 / 14.3 | 22 | intergenic (+9/‑34) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913 | 225,467 | 0 | G | T | 26.1% | 19.6 / 12.9 | 23 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| Marginal new junction evidence (lowest skew 10 of 113 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3798221 = | 174 (2.330) | 13 (0.190) | 11/268 | 3.7 | 7.7% | intergenic (+14/+18) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | 3798249 = | 151 (2.220) | coding (1064/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | = 225685 | 109 (1.460) | 12 (0.170) | 10/282 | 4.2 | 10.3% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 3943636 | NA (NA) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 3921430 | 123 (1.650) | 9 (0.130) | 8/282 | 4.7 | 7.3% | coding (622/816 nt) | atpB | F0 sector of membrane‑bound ATP synthase, subunit a |
| ? | NC_000913 | = 3921440 | 111 (1.550) | coding (612/816 nt) | atpB | F0 sector of membrane‑bound ATP synthase, subunit a | |||||
| * | ? | NC_000913 | 4542682 = | 176 (2.350) | 7 (0.100) | 7/276 | 4.9 | 4.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 129 (1.840) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3650712 = | NA (NA) | 12 (0.170) | 7/280 | 5.0 | NA | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3650744 = | NA (NA) | noncoding (33/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 225997 | NA (NA) | 7 (0.100) | 7/284 | 5.0 | NA | noncoding (239/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 4281812 = | 157 (2.100) | 7 (0.100) | 6/274 | 5.2 | 4.7% | coding (1264/1293 nt) | yjcF | pentapeptide repeats protein |
| ? | NC_000913 | 4281841 = | 136 (1.950) | coding (1235/1293 nt) | yjcF | pentapeptide repeats protein | |||||
| * | ? | NC_000913 | 3383284 = | 97 (1.300) | 8 (0.120) | 6/270 | 5.2 | 8.2% | intergenic (+17/+46) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | 3383314 = | 89 (1.300) | intergenic (+47/+16) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 4263218 | 111 (1.480) | 7 (0.100) | 6/278 | 5.3 | 5.9% | intergenic (+136/+30) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | = 4263241 | 118 (1.670) | intergenic (+159/+7) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | 3462076 = | 113 (1.510) | 6 (0.080) | 6/280 | 5.3 | 5.6% | coding (103/378 nt) | gspI | general secretory pathway component, cryptic |
| ? | NC_000913 | 3462114 = | 93 (1.310) | coding (141/378 nt) | gspI | general secretory pathway component, cryptic | |||||