mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 181 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 105 (0.960) | 3 (0.030) | 3/256 | NT | 2.9% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 104 (1.030) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| * | ? | NC_000913 | = 4621838 | 106 (0.970) | 4 (0.040) | 3/262 | NT | 3.7% | coding (70/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4621865 | 111 (1.080) | coding (97/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | 4607519 = | 124 (1.130) | 3 (0.030) | 3/272 | NT | 2.6% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 103 (0.960) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4583137 | 131 (1.200) | 6 (0.060) | 3/266 | NT | 4.7% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 118 (1.130) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4575345 = | 91 (0.830) | 3 (0.030) | 3/262 | NT | 3.6% | pseudogene (1427/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4575374 = | 77 (0.750) | pseudogene (1456/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | = 4574561 | 133 (1.210) | 3 (0.030) | 3/264 | NT | 2.4% | pseudogene (643/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | = 4574583 | 122 (1.170) | pseudogene (665/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | 4574555 = | 132 (1.210) | 3 (0.030) | 3/264 | NT | 2.4% | pseudogene (637/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4574591 = | 122 (1.170) | pseudogene (673/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | = 4565312 | 151 (1.380) | 3 (0.030) | 3/270 | NT | 2.0% | coding (539/1152 nt) | yjiM | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| ? | NC_000913 | = 4565342 | 155 (1.460) | coding (509/1152 nt) | yjiM | putative 2‑hydroxyglutaryl‑CoA dehydratase | |||||
| * | ? | NC_000913 | 4542682 = | 127 (1.160) | 3 (0.030) | 3/260 | NT | 2.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 127 (1.240) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4536095 | 130 (1.190) | 3 (0.030) | 3/260 | NT | 2.3% | intergenic (+64/+519) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | NC_000913 | = 4536110 | 131 (1.280) | intergenic (+79/+504) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||