mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 287 | Δ1 bp | 5.9% | intergenic (+32/‑50) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 291 | A→T | 5.8% | intergenic (+36/‑46) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 293:1 | +G | 5.8% | intergenic (+38/‑44) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 9,907 | A→C | 8.1% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 6.7% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 10,619 | G→T | 5.2% | intergenic (‑125/+24) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 10,621 | A→T | 5.1% | intergenic (‑127/+22) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 32,907 | T→C | 5.2% | A697A (GCT→GCC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,911 | G→T | 5.2% | E699* (GAA→TAA) ‡ | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,912 | A→C | 5.2% | E699A (GAA→GCA) ‡ | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,916 | G→A | 5.2% | M700I (ATG→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 53,272 | T→G | 5.6% | M49L (ATG→CTG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 8.2% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 8.4% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 125,352 | A→T | 8.5% | H779L (CAC→CTC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 138,662 | T→G | 7.8% | intergenic (+29/+173) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,663 | C→A | 5.8% | intergenic (+30/+172) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,664 | T→G | 5.8% | intergenic (+31/+171) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,665 | C→A | 6.2% | intergenic (+32/+170) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 139,128 | G→A | 5.7% | P700S (CCG→TCG) | gcd ← | glucose dehydrogenase |
| RA | 146,291 | G→C | 5.3% | S404T (AGT→ACT) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 146,293 | A→C | 5.4% | N405H (AAC→CAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 146,733 | G→A | 8.1% | intergenic (‑39/‑235) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 146,734 | A→T | 8.8% | intergenic (‑40/‑234) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 146,735 | T→C | 8.2% | intergenic (‑41/‑233) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 176,978 | A→T | 5.3% | intergenic (+24/+23) | erpA → / ← yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| RA | 184,240 | G→T | 10.6% | intergenic (‑145/+17) | yaeH ← / ← yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| RA | 201,032 | G→A | 5.7% | G21D (GGC→GAC) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 209,171 | A→G | 5.0% | N184S (AAC→AGC) | accA → | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 289,256 | G→C | 8.2% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 9.2% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 304,083 | G→T | 5.0% | P34T (CCC→ACC) | ykgJ ← | UPF0153 cysteine cluster protein |
| RA | 314,255 | T→C | 6.5% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 6.3% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 318,651 | T→A | 5.3% | intergenic (‑84/+25) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 394,472 | G→A | 8.3% | intergenic (+54/‑34) | yaiT → / → yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| RA | 394,473 | G→T | 8.3% | intergenic (+55/‑33) | yaiT → / → yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| RA | 394,474 | A→C | 8.0% | intergenic (+56/‑32) | yaiT → / → yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| RA | 394,475 | T→C | 8.2% | intergenic (+57/‑31) | yaiT → / → yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| RA | 422,429 | T→G | 21.3% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 423,989 | A→C | 5.2% | N491T (AAC→ACC) | malZ → | maltodextrin glucosidase |
| RA | 424,873 | A→C | 5.7% | S16A (TCG→GCG) | acpH ← | acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
| RA | 517,379 | C→A | 6.1% | intergenic (+17/+46) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 517,380 | A→T | 5.9% | intergenic (+18/+45) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 517,383 | A→T | 6.2% | intergenic (+21/+42) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 517,384 | T→G | 6.2% | intergenic (+22/+41) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 556,021 | T→C | 5.4% | intergenic (+25/+11) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 569,160 | G→T | 5.6% | D87Y (GAC→TAC) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 603,393 | T→A | 5.5% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 639,654 | T→C | 5.2% | intergenic (+146/‑99) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 644,561 | A→T | 5.3% | L148Q (CTG→CAG) | rna ← | ribonuclease I |
| RA | 644,563 | G→C | 5.5% | C147W (TGC→TGG) | rna ← | ribonuclease I |
| RA | 654,560 | A→C | 7.6% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 6.6% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,566 | G→T | 6.9% | intergenic (+24/+17) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 657,531 | T→G | 5.5% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 6.8% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 6.9% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,204 | C→T | 5.6% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 6.0% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 6.7% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 5.7% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 662,683 | A→T | 5.1% | intergenic (‑41/+69) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 672,242 | T→G | 5.8% | I848L (ATT→CTT) | leuS ← | leucyl‑tRNA synthetase |
| RA | 672,243 | C→T | 5.5% | V847V (GTG→GTA) ‡ | leuS ← | leucyl‑tRNA synthetase |
| RA | 672,244 | A→G | 6.3% | V847A (GTG→GCG) ‡ | leuS ← | leucyl‑tRNA synthetase |
| RA | 672,245 | C→A | 5.6% | V847L (GTG→TTG) ‡ | leuS ← | leucyl‑tRNA synthetase |
| RA | 752,065 | G→C | 5.0% | D35E (GAC→GAG) ‡ | ybgQ ← | putative outer membrane protein |
| RA | 752,066 | T→G | 6.3% | D35A (GAC→GCC) ‡ | ybgQ ← | putative outer membrane protein |
| RA | 752,068 | G→C | 5.3% | R34R (CGC→CGG) | ybgQ ← | putative outer membrane protein |
| RA | 794,938 | C→A | 5.6% | intergenic (+16/‑151) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,939 | T→C | 5.9% | intergenic (+17/‑150) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,942 | G→A | 5.8% | intergenic (+20/‑147) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,943 | T→G | 6.8% | intergenic (+21/‑146) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 805,312 | G→T | 6.7% | E604* (GAG→TAG) | ybhJ → | aconitase family protein |
| RA | 805,959 | A→G | 5.2% | intergenic (+195/+39) | ybhJ → / ← ybhC | aconitase family protein/acyl‑CoA thioesterase, lipoprotein |
| RA | 838,550 | G→A | 6.2% | R220W (CGG→TGG) | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 854,790 | T→C | 5.6% | intergenic (+25/+34) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,792 | A→C | 5.6% | intergenic (+27/+32) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,793 | T→A | 5.6% | intergenic (+28/+31) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,794 | G→T | 5.7% | intergenic (+29/+30) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,796 | G→A | 5.6% | intergenic (+31/+28) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 857,576 | T→C | 5.5% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 6.5% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 5.3% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 881,123 | G→A | 5.3% | G133S (GGT→AGT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6a |
| RA | 922,314:1 | +C | 5.7% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 934,195 | T→A | 5.5% | A324A (GCT→GCA) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 934,198 | T→A | 5.5% | A325A (GCT→GCA) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 940,294 | A→T | 5.6% | K289N (AAA→AAT) | serS → | seryl‑tRNA synthetase |
| RA | 993,254 | A→G | 5.3% | intergenic (+20/+23) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,255 | A→C | 6.8% | intergenic (+21/+22) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,259 | C→T | 5.3% | intergenic (+25/+18) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 1,015,912 | T→A | 6.2% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,048,429 | C→T | 6.9% | W88* (TGG→TAG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,048,430 | A→G | 7.0% | W88R (TGG→CGG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,104,932 | C→T | 5.5% | intergenic (+30/‑29) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,934 | A→C | 5.2% | intergenic (+32/‑27) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,127,799 | C→A | 5.0% | intergenic (+70/‑40) | yceM → / → murJ | putative oxidoreductase/putative lipid II flippase |
| RA | 1,127,800 | T→A | 5.3% | intergenic (+71/‑39) | yceM → / → murJ | putative oxidoreductase/putative lipid II flippase |
| RA | 1,169,380 | T→C | 6.8% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 7.5% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 6.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,178,848 | A→T | 5.2% | K86* (AAA→TAA) ‡ | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,178,849 | A→T | 5.4% | K86I (AAA→ATA) ‡ | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,223,929 | T→C | 7.2% | intergenic (+22/+350) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,223,930 | T→G | 7.5% | intergenic (+23/+349) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,223,931 | C→A | 6.3% | intergenic (+24/+348) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,223,932 | G→A | 6.6% | intergenic (+25/+347) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,231,963 | T→A | 5.4% | Y260N (TAT→AAT) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,233,154 | T→A | 10.3% | intergenic (‑124/+22) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,233,157 | T→A | 11.6% | intergenic (‑127/+19) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,235,687 | A→T | 5.2% | intergenic (+30/+22) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,279,508 | T→C | 5.1% | intergenic (+160/‑356) | narK → / → narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| RA | 1,287,009 | A→T | 17.2% | intergenic (+483/+57) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,161 | G→A | 12.0% | noncoding (76/171 nt) Q6* (CAA→TAA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,292,472 | G→A | 5.4% | intergenic (+107/+37) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,473 | C→G | 5.4% | intergenic (+108/+36) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,292,474 | T→C | 5.2% | intergenic (+109/+35) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| JC JC | 1,292,997 | IS2 (–) +5 bp | 100% | intergenic (‑75/‑526) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,015 | IS1 (–) +8 bp | 37.1% | intergenic (‑93/‑505) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,022 | IS1 (+) +9 bp | 40.0% | intergenic (‑100/‑497) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,302,827 | G→A | 6.8% | intergenic (+14/‑72) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,834 | G→C | 6.8% | intergenic (+21/‑65) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,835 | T→A | 6.9% | intergenic (+22/‑64) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,836 | G→C | 6.8% | intergenic (+23/‑63) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,843 | T→C | 6.7% | intergenic (+30/‑56) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,311,285 | A→C | 6.4% | E66A (GAG→GCG) | tonB → | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| RA | 1,311,830 | A→G | 7.9% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 8.0% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,322,394 | C→G | 5.9% | D185H (GAC→CAC) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,396 | A→T | 6.8% | I184N (ATT→AAT) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,398 | C→G | 5.9% | V183V (GTG→GTC) | trpE ← | component I of anthranilate synthase |
| RA | 1,327,213 | C→T | 5.7% | T121I (ACC→ATC) | rluB → | 23S rRNA pseudouridine(2605) synthase |
| RA | 1,358,800 | G→A | 5.7% | P130S (CCG→TCG) | puuP ← | putrescine importer |
| RA | 1,381,915 | G→T | 5.4% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,429,019 | G→T | 5.7% | intergenic (+35/‑30) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,434,310 | C→T | 5.1% | intergenic (‑86/+648) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,463,240 | T→A | 7.6% | S372S (TCT→TCA) | paaK → | phenylacetyl‑CoA ligase |
| RA | 1,463,241 | G→C | 7.9% | V373L (GTG→CTG) ‡ | paaK → | phenylacetyl‑CoA ligase |
| RA | 1,463,242 | T→A | 8.2% | V373E (GTG→GAG) ‡ | paaK → | phenylacetyl‑CoA ligase |
| RA | 1,466,336 | C→G | 8.0% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,471,095 | G→C | 5.4% | pseudogene (579/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,471,097 | C→A | 5.8% | pseudogene (581/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,471,102 | G→C | 5.4% | pseudogene (586/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,481,117 | T→A | 5.3% | V70D (GTT→GAT) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,118 | T→A | 5.9% | V70V (GTT→GTA) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,122 | A→C | 5.3% | S72R (AGC→CGC) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,124 | C→T | 5.2% | S72S (AGC→AGT) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,125 | A→G | 5.3% | T73A (ACG→GCG) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,127 | G→T | 5.4% | T73T (ACG→ACT) ‡ | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,481,131 | T→A | 5.1% | F75I (TTC→ATC) | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,517,059 | G→C | 5.0% | intergenic (+57/+40) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| RA | 1,517,061 | T→G | 5.1% | intergenic (+59/+38) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| RA | 1,536,877 | C→G | 5.6% | A145P (GCA→CCA) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,879 | T→A | 5.4% | E144V (GAG→GTG) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,555,784 | G→C | 5.0% | intergenic (‑115/+42) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,579,563 | G→T | 8.9% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 6.6% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 6.4% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 6.4% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,585,149 | Δ1 bp | 5.5% | coding (1338/2280 nt) | ydeP ← | putative oxidoreductase |
| RA | 1,585,156:1 | +C | 5.6% | coding (1331/2280 nt) | ydeP ← | putative oxidoreductase |
| RA | 1,596,499 | C→A | 5.9% | pseudogene (1489/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,596,501 | T→A | 5.3% | pseudogene (1487/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,596,503 | T→G | 5.1% | pseudogene (1485/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,609,555 | Δ1 bp | 5.3% | coding (1126/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,609,561:1 | +C | 5.2% | coding (1120/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,644,540 | A→C | 5.4% | intergenic (‑236/+111) | ydfU ← / ← rem | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| RA | 1,660,194 | A→C | 10.2% | K709T (AAG→ACG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,198 | T→A | 7.8% | A710A (GCT→GCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,200 | C→G | 8.8% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,202 | T→A | 8.8% | C712S (TGC→AGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,206 | G→T | 7.1% | R713L (CGT→CTT) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,666,470 | C→A | 5.2% | L386I (CTA→ATA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,679,639 | A→C | 7.1% | Q28P (CAA→CCA) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,641 | A→T | 8.4% | N29Y (AAT→TAT) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,644 | A→T | 7.5% | M30L (ATG→TTG) ‡ | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,646 | G→T | 6.8% | M30I (ATG→ATT) ‡ | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,684,016 | A→G | 5.7% | S379G (AGC→GGC) | rstB → | sensory histidine kinase of RstAB two‑component system |
| RA | 1,684,019 | C→T | 5.6% | R380W (CGG→TGG) | rstB → | sensory histidine kinase of RstAB two‑component system |
| RA | 1,689,821 | T→G | 5.5% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,693,826 | A→C | 5.4% | R146R (CGT→CGG) | uidB ← | glucuronide transporter |
| RA | 1,702,500 | C→G | 5.2% | H90D (CAC→GAC) | add → | adenosine deaminase |
| RA | 1,707,028 | T→G | 5.1% | V37G (GTA→GGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,662 | C→G | 9.9% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,709 | T→A | 22.8% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,847 | G→C | 17.4% | E643D (GAG→GAC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,715,921 | T→A | 5.1% | intergenic (‑32/+27) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,715,922 | C→A | 5.4% | intergenic (‑33/+26) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,720,364 | G→T | 7.2% | intergenic (+21/+26) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,757,688 | T→A | 5.3% | intergenic (+31/+33) | lpp → / ← ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| RA | 1,830,060 | G→C | 6.7% | R236G (CGC→GGC) | astA ← | arginine succinyltransferase |
| RA | 1,830,061 | G→T | 6.5% | A235A (GCC→GCA) | astA ← | arginine succinyltransferase |
| RA | 1,830,064 | A→C | 6.8% | P234P (CCT→CCG) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,830,065 | G→C | 7.5% | P234R (CCT→CGT) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,851,204 | A→C | 6.0% | T115T (ACA→ACC) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,851,205 | G→C | 6.5% | G116R (GGG→CGG) ‡ | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,851,206 | G→T | 6.7% | G116V (GGG→GTG) ‡ | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,885,808 | T→A | 5.6% | intergenic (+19/‑37) | yeaW → / → yeaX | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component |
| RA | 1,885,810 | T→A | 5.7% | intergenic (+21/‑35) | yeaW → / → yeaX | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component |
| RA | 1,886,828 | T→G | 6.0% | intergenic (+18/+36) | yeaX → / ← rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
| RA | 1,888,032 | T→A | 5.8% | intergenic (‑41/+29) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,034 | A→T | 6.6% | intergenic (‑43/+27) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,889,915 | A→C | 5.8% | intergenic (‑169/+36) | fadD ← / ← yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| RA | 1,929,012 | C→T | 7.9% | intergenic (‑173/+36) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,016 | A→G | 8.0% | intergenic (‑177/+32) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,018 | A→T | 7.8% | intergenic (‑179/+30) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,020 | T→A | 7.7% | intergenic (‑181/+28) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,022 | A→T | 7.3% | intergenic (‑183/+26) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,024 | C→T | 7.2% | intergenic (‑185/+24) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,028 | A→G | 6.9% | intergenic (‑189/+20) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,971,926 | G→A | 5.8% | H256Y (CAT→TAT) | tar ← | methyl‑accepting chemotaxis protein II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,009,731 | A→G | 5.1% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 6.7% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 5.3% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,044,733 | T→C | 5.3% | intergenic (+109/‑205) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,054,976 | A→G | 6.3% | intergenic (+17/‑85) | shiA → / → amn | shikimate transporter/AMP nucleosidase |
| RA | 2,054,977 | T→G | 6.4% | intergenic (+18/‑84) | shiA → / → amn | shikimate transporter/AMP nucleosidase |
| RA | 2,054,978 | C→A | 6.2% | intergenic (+19/‑83) | shiA → / → amn | shikimate transporter/AMP nucleosidase |
| RA | 2,054,979 | C→T | 6.5% | intergenic (+20/‑82) | shiA → / → amn | shikimate transporter/AMP nucleosidase |
| RA | 2,057,595 | T→C | 5.9% | intergenic (+21/+432) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,597 | T→G | 5.8% | intergenic (+23/+430) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,599 | T→A | 5.7% | intergenic (+25/+428) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,601 | C→A | 7.1% | intergenic (+27/+426) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,603 | G→A | 6.6% | intergenic (+29/+424) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,059,946 | T→A | 5.7% | intergenic (+20/+18) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,062,354 | T→A | 8.2% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 7.6% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 7.5% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 7.4% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,068,407 | A→G | 5.0% | pseudogene (13/159 nt) | yoeH ← | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,068,411 | C→T | 5.0% | pseudogene (9/159 nt) | yoeH ← | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,126,154 | A→T | 5.7% | I23I (ATT→ATA) ‡ | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,126,155 | A→T | 5.1% | I23N (ATT→AAT) ‡ | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,126,158 | A→T | 5.1% | F22Y (TTT→TAT) ‡ | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,126,159 | A→T | 5.5% | F22I (TTT→ATT) ‡ | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,337 | G→T | 5.2% | intergenic (‑133/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,340 | A→C | 6.1% | intergenic (‑136/+172) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,216,157 | A→C | 5.9% | V107G (GTT→GGT) | yehW ← | putative ABC transporter permease |
| RA | 2,259,549 | A→T | 5.5% | intergenic (‑253/+170) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,550 | A→T | 5.4% | intergenic (‑254/+169) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,553 | A→T | 5.3% | intergenic (‑257/+166) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,286,311 | C→G | 5.5% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 5.8% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 5.9% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,087 | C→T | 5.0% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,312,170 | G→C | 7.7% | L194V (CTG→GTG) | ompC ← | outer membrane porin protein C |
| RA | 2,319,581 | A→G | 5.0% | V99A (GTG→GCG) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,407,890 | Δ1 bp | 5.3% | coding (330/1218 nt) | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,898 | A→C | 7.2% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 7.4% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,905:1 | +C | 6.1% | coding (345/1218 nt) | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,414,689 | C→G | 5.5% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,428,040 | A→T | 5.0% | intergenic (‑249/+17) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,440,295 | A→T | 5.2% | intergenic (‑175/+90) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,865 | C→T | 5.3% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 5.2% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,470,482 | C→A | 5.1% | intergenic (+20/‑333) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,477,016 | T→A | 7.3% | Q205L (CAG→CTG) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,018 | T→A | 5.6% | R204S (AGA→AGT) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,020 | T→A | 6.5% | R204* (AGA→TGA) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,512,728 | C→A | 5.6% | intergenic (‑22/‑314) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,512,729 | T→A | 5.3% | intergenic (‑23/‑313) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,533,415 | T→A | 8.3% | intergenic (+35/‑349) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,416 | T→A | 6.7% | intergenic (+36/‑348) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,417 | T→A | 6.7% | intergenic (+37/‑347) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,418 | T→A | 6.5% | intergenic (+38/‑346) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,538,549 | A→T | 6.3% | intergenic (+66/+123) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,538,550 | A→T | 6.7% | intergenic (+67/+122) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,538,556 | T→G | 7.0% | intergenic (+73/+116) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,538,557 | T→C | 6.3% | intergenic (+74/+115) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,560,985 | C→A | 16.6% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,996 | G→T | 16.7% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,568,254 | A→C | 5.7% | intergenic (‑147/+70) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
| RA | 2,587,006 | A→C | 8.3% | T426P (ACG→CCG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,007 | C→T | 8.2% | T426M (ACG→ATG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,010 | T→A | 8.1% | L427Q (CTG→CAG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,013 | A→G | 8.6% | Q428R (CAG→CGG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,014 | G→T | 10.0% | Q428H (CAG→CAT) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,599,240 | T→A | 5.2% | K174I (AAA→ATA) | dapA ← | dihydrodipicolinate synthase |
| RA | 2,632,584 | A→T | 6.8% | intergenic (‑49/+20) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,586 | G→C | 6.2% | intergenic (‑51/+18) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,588 | A→T | 6.1% | intergenic (‑53/+16) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,648,452 | C→A | 8.2% | G1279V (GGT→GTT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,455 | C→G | 8.1% | R1278P (CGG→CCG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,458 | T→G | 7.5% | N1277T (AAC→ACC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,463:1 | +A | 8.1% | coding (3825/4962 nt) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,653,367 | G→A | 5.8% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 5.4% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,657,426 | G→A | 5.4% | L504L (CTG→TTG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,432 | A→C | 5.5% | Y502D (TAC→GAC) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,433 | A→T | 5.2% | S501S (TCT→TCA) ‡ | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,434 | G→T | 5.2% | S501Y (TCT→TAT) ‡ | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,440 | T→C | 6.2% | K499R (AAA→AGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,660,612 | T→A | 5.3% | Y307F (TAC→TTC) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 2,704,304 | A→G | 6.8% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 6.6% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 6.6% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,707,321 | A→T | 5.5% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,742,795 | A→T | 5.3% | E138V (GAA→GTA) | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,753,986 | A→T | 8.0% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,761,620 | T→G | 7.3% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 6.9% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,794,081 | A→C | 5.3% | intergenic (+66/‑172) | gabT → / → gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter |
| RA | 2,804,531 | G→T | 10.5% | intergenic (+70/‑284) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,834,232 | C→G | 5.2% | T107T (ACC→ACG) | norW → | NADH:flavorubredoxin oxidoreductase |
| RA | 2,854,311 | T→A | 5.1% | intergenic (+47/‑27) | hypE → / → fhlA | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein/formate hydrogenlyase transcriptional activator |
| RA | 2,854,312 | T→A | 5.3% | intergenic (+48/‑26) | hypE → / → fhlA | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein/formate hydrogenlyase transcriptional activator |
| RA | 2,854,313 | T→A | 5.1% | intergenic (+49/‑25) | hypE → / → fhlA | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein/formate hydrogenlyase transcriptional activator |
| RA | 2,870,870 | T→A | 5.5% | E145D (GAA→GAT) | truD ← | tRNA(Glu) pseudouridine(13) synthase |
| RA | 2,919,901 | G→C | 5.6% | G282G (GGC→GGG) ‡ | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,919,903 | C→G | 5.0% | G282R (GGC→CGC) ‡ | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,919,905 | G→C | 5.0% | T281S (ACC→AGC) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,919,907 | C→T | 5.0% | A280A (GCG→GCA) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,980,742 | A→G | 7.1% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,744 | A→T | 7.0% | intergenic (‑109/+20) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 7.3% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,987,103 | C→T | 5.7% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 5.6% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,045,129 | G→A | 5.1% | intergenic (+28/+29) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,095,033 | C→A | 8.8% | S16S (TCG→TCT) | yggR ← | putative PilT family AAA+ ATPase |
| RA | 3,125,395 | A→T | 7.2% | L22Q (CTG→CAG) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,399 | T→A | 7.6% | I21F (ATC→TTC) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,402 | T→C | 8.1% | S20G (AGC→GGC) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,404 | T→A | 7.7% | D19V (GAC→GTC) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,406 | G→A | 8.4% | A18A (GCC→GCT) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,409 | T→A | 9.1% | E17D (GAA→GAT) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,413 | A→T | 6.7% | L16Q (CTG→CAG) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,136,629 | C→A | 6.0% | intergenic (‑258/+34) | pitB ← / ← gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,143,980 | C→A | 8.5% | G62V (GGC→GTC) | hybB ← | putative hydrogenase 2 cytochrome b type component |
| RA | 3,155,227 | C→A | 5.5% | intergenic (‑9/‑128) | yqhC ← / → yqhD | transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent |
| RA | 3,180,506 | A→C | 6.5% | E29A (GAG→GCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 5.0% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,181,600 | A→G | 6.2% | intergenic (+19/+19) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,181,601 | C→A | 6.6% | intergenic (+20/+18) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,181,602 | T→G | 5.9% | intergenic (+21/+17) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,181,603 | C→T | 6.7% | intergenic (+22/+16) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,183,345:1 | +T | 6.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 6.0% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,202,678 | C→G | 5.4% | P263R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,685 | A→G | 6.7% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,686 | C→T | 5.9% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,693 | C→G | 5.6% | P268R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,234,506 | G→A | 5.8% | intergenic (‑51/+233) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,234,507 | A→T | 6.3% | intergenic (‑52/+232) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,234,508 | T→C | 5.9% | intergenic (‑53/+231) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,256,441 | T→G | 7.7% | T71P (ACG→CCG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,442 | G→C | 5.6% | G70G (GGC→GGG) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,443 | C→A | 5.7% | G70V (GGC→GTC) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,450 | C→T | 5.6% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,263,501 | G→C | 5.2% | P54A (CCG→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,502 | T→C | 5.7% | A53A (GCA→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,288,032 | C→A | 5.6% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 5.6% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,291,109 | A→T | 5.7% | K766* (AAA→TAA) | yraJ → | putative outer membrane protein |
| RA | 3,305,913 | G→T | 6.1% | intergenic (‑96/+58) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| RA | 3,305,914 | G→T | 7.2% | intergenic (‑97/+57) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| RA | 3,305,916 | A→T | 6.5% | intergenic (‑99/+55) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| RA | 3,305,918 | A→C | 5.9% | intergenic (‑101/+53) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| RA | 3,305,919 | A→C | 6.7% | intergenic (‑102/+52) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| RA | 3,313,207 | G→A | 6.3% | intergenic (‑29/+135) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,208 | T→A | 6.2% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 6.4% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,360,643 | T→A | 6.7% | intergenic (+27/‑533) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,644 | G→C | 6.5% | intergenic (+28/‑532) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,645 | T→A | 6.5% | intergenic (+29/‑531) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,371,069 | G→T | 5.6% | intergenic (‑33/+15) | nanE ← / ← nanT | putative N‑acetylmannosamine‑6‑P epimerase/sialic acid transporter |
| RA | 3,418,628 | G→A | 5.7% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 6.5% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,423,390 | C→T | 5.3% | intergenic (+196/+33) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,398 | C→A | 5.1% | intergenic (+204/+25) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,399 | C→A | 5.2% | intergenic (+205/+24) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,405 | A→G | 5.5% | intergenic (+211/+18) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,531 | T→G | 6.2% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,437,909 | A→T | 5.3% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 5.1% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,439,588 | G→C | 5.9% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 5.9% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,441,060 | T→C | 5.5% | K206E (AAG→GAG) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,061 | G→C | 5.5% | S205S (TCC→TCG) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,062 | G→A | 5.7% | S205F (TCC→TTC) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,442,572 | A→G | 6.7% | intergenic (‑101/+46) | rpsM ← / ← rpmJ | 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36 |
| RA | 3,442,573 | T→A | 6.7% | intergenic (‑102/+45) | rpsM ← / ← rpmJ | 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36 |
| RA | 3,442,574 | C→T | 6.2% | intergenic (‑103/+44) | rpsM ← / ← rpmJ | 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36 |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,471,357 | C→T | 8.3% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 9.1% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 7.8% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 7.7% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,477,340 | T→G | 5.1% | E27A (GAA→GCA) ‡ | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,477,341 | C→A | 5.1% | E27* (GAA→TAA) ‡ | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,483,242 | G→C | 6.6% | S14T (AGC→ACC) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,243 | C→T | 6.1% | S14S (AGC→AGT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,244 | A→G | 6.2% | S15G (AGT→GGT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,245 | G→C | 5.8% | S15T (AGT→ACT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,486,217 | A→C | 5.5% | Q33P (CAG→CCG) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,563,539 | T→C | 5.6% | intergenic (+21/+248) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,546 | T→G | 5.0% | intergenic (+28/+241) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,547 | C→A | 5.1% | intergenic (+29/+240) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,554 | G→A | 5.3% | intergenic (+36/+233) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,585,060 | C→G | 6.2% | intergenic (+17/+21) | yrhB → / ← ggt | stable heat shock chaperone/gamma‑glutamyltranspeptidase |
| RA | 3,585,061 | C→T | 6.2% | intergenic (+18/+20) | yrhB → / ← ggt | stable heat shock chaperone/gamma‑glutamyltranspeptidase |
| RA | 3,585,062 | A→G | 5.9% | intergenic (+19/+19) | yrhB → / ← ggt | stable heat shock chaperone/gamma‑glutamyltranspeptidase |
| RA | 3,585,063 | C→G | 5.9% | intergenic (+20/+18) | yrhB → / ← ggt | stable heat shock chaperone/gamma‑glutamyltranspeptidase |
| RA | 3,600,988 | T→A | 5.3% | intergenic (‑205/+40) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,639,217 | C→A | 5.8% | intergenic (+76/+168) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,642,361 | T→A | 5.3% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 7.4% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 7.5% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 7.3% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,663,547 | T→C | 8.0% | intergenic (+20/+343) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,553 | A→C | 8.4% | intergenic (+26/+337) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,555 | G→T | 8.9% | intergenic (+28/+335) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,556 | A→C | 8.3% | intergenic (+29/+334) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,558 | G→T | 8.7% | intergenic (+31/+332) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,564 | G→A | 8.7% | intergenic (+37/+326) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,719,803 | A→T | 5.7% | intergenic (+35/‑246) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,804 | T→C | 6.0% | intergenic (+36/‑245) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,805 | G→A | 6.0% | intergenic (+37/‑244) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,806 | A→T | 6.4% | intergenic (+38/‑243) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,728,219 | T→A | 5.0% | I385F (ATT→TTT) | xylB ← | xylulokinase |
| RA | 3,741,089 | G→T | 6.9% | intergenic (+131/+20) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,741,090 | A→C | 5.8% | intergenic (+132/+19) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,741,091 | G→T | 5.5% | intergenic (+133/+18) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,741,092 | A→C | 5.5% | intergenic (+134/+17) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,748,108 | T→A | 8.1% | F342Y (TTC→TAC) | lyxK → | L‑xylulose kinase |
| RA | 3,748,110 | C→A | 8.2% | L343M (CTG→ATG) | lyxK → | L‑xylulose kinase |
| RA | 3,781,131 | T→G | 8.6% | intergenic (+114/‑84) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,811,212 | C→T | 5.4% | intergenic (‑60/+38) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,216 | C→T | 5.4% | intergenic (‑64/+34) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,217 | G→C | 5.4% | intergenic (‑65/+33) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,218 | G→C | 5.3% | intergenic (‑66/+32) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,219 | A→G | 5.3% | intergenic (‑67/+31) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,223 | A→G | 5.4% | intergenic (‑71/+27) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,817,940 | T→A | 7.6% | F61I (TTC→ATC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,948 | G→T | 7.5% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 8.1% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,957 | T→A | 7.7% | D66E (GAT→GAA) | dinD → | DNA damage‑inducible protein |
| RA | 3,874,048 | T→G | 6.1% | K143Q (AAA→CAA) | dgoK ← | 2‑oxo‑3‑deoxygalactonate kinase |
| RA | 3,874,049 | G→C | 6.3% | C142W (TGC→TGG) ‡ | dgoK ← | 2‑oxo‑3‑deoxygalactonate kinase |
| RA | 3,874,050 | C→A | 6.3% | C142F (TGC→TTC) ‡ | dgoK ← | 2‑oxo‑3‑deoxygalactonate kinase |
| RA | 3,883,834 | T→A | 5.0% | intergenic (‑105/‑502) | dnaA ← / → rpmH | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator/50S ribosomal subunit protein L34 |
| RA | 3,883,838 | T→A | 5.0% | intergenic (‑109/‑498) | dnaA ← / → rpmH | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator/50S ribosomal subunit protein L34 |
| RA | 3,885,300 | T→G | 5.4% | R75R (CGT→CGG) | yidC → | membrane protein insertase |
| RA | 3,891,502 | C→G | 6.4% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 5.8% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.8% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,927,123 | A→T | 5.0% | intergenic (‑120/‑32) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,927,126 | A→T | 5.1% | intergenic (‑123/‑29) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,947,051 | A→C | 5.5% | intergenic (+19/+77) | trpT → / ← hdfR | tRNA‑Trp/flhDC operon transcriptional repressor |
| RA | 3,947,332 | A→T | 5.6% | A212A (GCT→GCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,959,515 | T→A | 5.7% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,966,769 | A→T | 5.1% | E118V (GAA→GTA) | rho → | transcription termination factor |
| RA | 3,981,102 | T→A | 5.7% | V72V (GTT→GTA) | yifK → | putative APC family amino acid transporter |
| RA | 4,000,230 | A→G | 9.1% | intergenic (+85/+62) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,000,231 | G→C | 9.3% | intergenic (+86/+61) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,000,237 | T→A | 9.4% | intergenic (+92/+55) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,000,238 | T→A | 9.5% | intergenic (+93/+54) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,000,244 | G→C | 9.4% | intergenic (+99/+48) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,000,245 | C→T | 9.9% | intergenic (+100/+47) | uvrD → / ← yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein |
| RA | 4,009,779 | T→G | 5.2% | L204V (TTG→GTG) | pldB → | lysophospholipase L2 |
| RA | 4,060,261 | G→T | 5.8% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 5.2% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,072,811 | A→C | 5.2% | V254G (GTG→GGG) | yihU ← | 3‑sulpholactaldehyde (SLA) reductase, NADH‑dependent; gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| RA | 4,082,696 | G→C | 7.4% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,094,415 | T→G | 6.9% | intergenic (‑143/+308) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,489 | G→A | 7.2% | intergenic (‑217/+234) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,106,369 | T→G | 6.2% | intergenic (+49/‑100) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,106,370 | G→C | 5.5% | intergenic (+50/‑99) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,106,371 | C→A | 5.7% | intergenic (+51/‑98) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,162,150 | T→G | 6.1% | intergenic (+20/+20) | yijD → / ← trmA | DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| RA | 4,162,151 | G→C | 6.1% | intergenic (+21/+19) | yijD → / ← trmA | DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| RA | 4,162,152 | G→C | 6.4% | intergenic (+22/+18) | yijD → / ← trmA | DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| RA | 4,162,153 | C→A | 5.8% | intergenic (+23/+17) | yijD → / ← trmA | DUF1422 family inner membrane protein/tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| RA | 4,196,356 | G→C | 5.2% | A151A (GCC→GCG) | rsd ← | stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 4,207,576 | A→G | 5.2% | intergenic (‑44/‑571) | purH ← / → rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| RA | 4,295,955 | G→A | 7.1% | intergenic (+161/+481) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,956 | C→A | 7.0% | intergenic (+162/+480) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,962 | T→G | 7.4% | intergenic (+168/+474) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,964 | A→T | 10.2% | intergenic (+170/+472) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,966 | C→A | 6.7% | intergenic (+172/+470) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,972 | T→G | 7.6% | intergenic (+178/+464) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,973 | T→C | 7.2% | intergenic (+179/+463) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,060 | C→T | 41.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,309,870 | C→A | 5.4% | G371C (GGC→TGC) | alsA ← | D‑allose ABC transporter ATPase |
| RA | 4,325,948 | A→G | 6.0% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,339,802 | A→G | 6.3% | A240A (GCT→GCC) | adiA ← | arginine decarboxylase |
| RA | 4,339,805 | C→T | 6.4% | Q239Q (CAG→CAA) | adiA ← | arginine decarboxylase |
| RA | 4,353,170 | G→A | 7.4% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 7.9% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 7.4% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 7.5% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,356,445 | A→T | 7.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 6.8% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,365,452 | G→T | 6.0% | intergenic (‑96/+20) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,365,453 | A→C | 7.3% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,415,523 | G→C | 9.3% | E417Q (GAG→CAG) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,525 | G→T | 9.7% | E417D (GAG→GAT) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,526 | A→C | 11.8% | M418L (ATG→CTG) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,528 | G→C | 9.0% | M418I (ATG→ATC) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,426,592 | T→A | 7.0% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,448,423 | T→A | 5.4% | intergenic (+188/‑24) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,448,424 | T→A | 5.4% | intergenic (+189/‑23) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,448,425 | T→A | 5.9% | intergenic (+190/‑22) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,520,500 | Δ1 bp | 8.5% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 8.3% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,537,639 | T→G | 5.3% | intergenic (‑45/+20) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,537,643 | C→A | 5.5% | intergenic (‑49/+16) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,559,349 | G→T | 6.9% | L60I (CTC→ATC) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,559,350 | G→C | 5.7% | I59M (ATC→ATG) ‡ | iadA ← | isoaspartyl dipeptidase |
| RA | 4,559,351 | A→C | 6.4% | I59S (ATC→AGC) ‡ | iadA ← | isoaspartyl dipeptidase |
| RA | 4,626,539 | A→C | 5.6% | T210P (ACG→CCG) | radA → | DNA repair protein |
| RA | 4,627,809 | G→T | 11.0% | M165I (ATG→ATT) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| RA | 4,627,813 | G→T | 13.8% | E167* (GAA→TAA) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| RA | 4,639,557 | A→T | 5.6% | intergenic (+27/+33) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448614 | 450722 | 2109 | 64 [62] | [62] 63 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 2403894 | 2404670 | 777 | 63 [60] | [58] 63 | nuoB–[nuoA] | nuoB,[nuoA] |
| * | * | ÷ | NC_000913 | 2947390 | 2947661 | 272 | 63 [62] | [61] 64 | [metZ]–[metV] | [metZ],metW,[metV] |
| * | * | ÷ | NC_000913 | 3423682–3424593 | 3424593 | 1–912 | 63 [61] | [62] 64 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 8 (0.080) | 5/264 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 167280 = | NA (NA) | 6 (0.060) | 5/256 | NT | NA | intergenic (+16/‑204) | mrcB/fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| ? | NC_000913 | 167307 = | NA (NA) | intergenic (+43/‑177) | mrcB/fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter | |||||
| * | ? | NC_000913 | 246135 = | 112 (1.020) | 5 (0.050) | 4/254 | NT | 5.1% | coding (105/279 nt) | yafQ | mRNA interferase toxin of toxin‑antitoxin pair YafQ/DinJ |
| ? | NC_000913 | 246180 = | 84 (0.840) | coding (60/279 nt) | yafQ | mRNA interferase toxin of toxin‑antitoxin pair YafQ/DinJ | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 4 (0.040) | 3/264 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 8 (0.080) | 5/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 315520 | NA (NA) | 7 (0.070) | 5/264 | NT | NA | noncoding (292/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315537 | NA (NA) | noncoding (309/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 3 (0.030) | 3/258 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 8 (0.080) | 4/258 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 5 (0.050) | 5/268 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 5 (0.050) | 3/272 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 4 (0.040) | 3/260 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 351579 = | 112 (1.020) | 6 (0.060) | 4/262 | NT | 5.6% | coding (365/1452 nt) | prpD | 2‑methylcitrate dehydratase |
| ? | NC_000913 | 351632 = | 97 (0.940) | coding (418/1452 nt) | prpD | 2‑methylcitrate dehydratase | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 4 (0.040) | 3/264 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 5 (0.050) | 4/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 7 (0.070) | 6/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 3 (0.030) | 3/266 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 739779 | 99 (0.900) | 7 (0.070) | 7/260 | NT | 7.1% | coding (273/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding |
| ? | NC_000913 | = 739800 | 92 (0.900) | coding (294/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding | |||||
| * | ? | NC_000913 | 781577 = | 67 (0.610) | 40 (0.380) +GAAG |
6/270 | NT | 43.3% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 41 (0.370) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.290) | 61 (0.630) | 47/246 | NT | 60.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 52 (0.540) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 31 (0.280) | 59 (0.610) | 48/246 | NT | 59.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 52 (0.540) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1269848 | 88 (0.800) | 5 (0.050) | 4/262 | NT | 5.7% | intergenic (‑38/‑10) | ldrB/rdlB | toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| ? | NC_000913 | = 1270345 | NA (NA) | coding (1/108 nt) | ldrC | toxic polypeptide, small | |||||
| * | ? | NC_000913 | = 1287084 | 26 (0.240) | 7 (0.070) | 5/238 | NT | 13.4% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 68 (0.730) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 133 (1.250) | 93/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 9 (0.090) | 6/266 | NT | 8.2% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 105 (0.960) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1923111 = | 105 (0.960) | 5 (0.050) | 5/264 | NT | 5.2% | noncoding (46/249 nt) | ryeA | novel sRNA, function unknown |
| ? | NC_000913 | 1923138 = | 84 (0.810) | noncoding (73/249 nt) | ryeA | novel sRNA, function unknown | |||||
| * | ? | NC_000913 | 2258692 = | 82 (0.750) | 4 (0.040) | 3/270 | NT | 5.1% | coding (605/942 nt) | psuK | pseudouridine kinase |
| ? | NC_000913 | 2258736 = | 68 (0.640) | coding (561/942 nt) | psuK | pseudouridine kinase | |||||
| * | ? | NC_000913 | 2505952 = | 117 (1.070) | 6 (0.060) | 5/264 | NT | 5.4% | coding (681/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | NC_000913 | 2505994 = | 101 (0.970) | coding (639/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | NC_000913 | = 2847309 | 92 (0.840) | 6 (0.060) | 6/266 | NT | 6.2% | coding (104/924 nt) | hycD | hydrogenase 3, membrane subunit |
| ? | NC_000913 | = 2847322 | 92 (0.880) | coding (91/924 nt) | hycD | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 2972673 | 124 (1.130) | 7 (0.070) | 6/272 | NT | 5.6% | coding (1190/1194 nt) | lplT | lysophospholipid transporter |
| ? | NC_000913 | = 2972702 | 116 (1.080) | coding (1161/1194 nt) | lplT | lysophospholipid transporter | |||||
| * | ? | NC_000913 | = 3238525 | 122 (1.110) | 9 (0.090) | 6/262 | NT | 7.2% | intergenic (+228/‑55) | ygjR/alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| ? | NC_000913 | = 3238557 | 118 (1.140) | intergenic (+260/‑23) | ygjR/alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator | |||||
| * | ? | NC_000913 | = 3411602 | 103 (0.940) | 6 (0.060) | 5/256 | NT | 5.7% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411616 | 104 (1.030) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 7 (0.070) | 6/264 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 8 (0.080) | 3/266 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3622466 = | NA (NA) | 6 (0.060) | 4/270 | NT | 7.8% | coding (3275/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622497 = | 73 (0.670) | coding (3306/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||