mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.7% | 190.6 / 97.9 | 167 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 177 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3943841 = | NA (NA) | 10 (0.160) | 9/268 | 6.0 | 100% | noncoding (138/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | 3943845 = | 0 (0.000) | noncoding (142/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2729043 | NA (NA) | 10 (0.160) | 9/268 | 6.0 | NA | noncoding (142/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | = 2729047 | NA (NA) | noncoding (138/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4171607 | 77 (1.140) | 16 (0.250) | 9/270 | 6.1 | 17.8% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3946688 | 135 (1.990) | 16 (0.250) | 9/270 | 6.1 | 11.0% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 16 (0.250) | 9/270 | 6.1 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 40 (0.590) | 16 (0.250) | 9/270 | 6.1 | 29.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4044087 | 109 (1.610) | 6 (0.110) | 6/230 | 6.4 | 6.5% | intergenic (+43/‑112) | dsbA/yihF | thiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF |
| ? | NC_000913 | = 4044061 | 84 (1.520) | intergenic (+17/‑138) | dsbA/yihF | thiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF | |||||
| * | ? | NC_000913 | 225889 = | 6 (0.090) | 8 (0.120) | 8/268 | 6.4 | 73.7% | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 3943852 = | 0 (0.000) | noncoding (149/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 225889 = | 6 (0.090) | 8 (0.120) | 8/268 | 6.4 | 58.4% | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 2729036 | NA (NA) | noncoding (149/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 13 (0.200) | 8/272 | 6.5 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA | |||||