mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.9% | 36.3 / 16.7 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 569159 | 1390 (38.780) | 47 (1.420) | 18/260 | 0.8 | 3.4% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 1380 (41.760) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 570695 = | 1469 (40.990) | 24 (0.700) | 16/268 | 1.1 | 1.7% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1310 (38.460) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 569149 = | 1390 (38.780) | 31 (0.940) | 15/260 | 1.1 | 2.3% | coding (248/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569173 = | 1380 (41.760) | coding (272/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 570627 = | 1684 (46.990) | 9 (0.280) | 8/256 | 2.5 | 0.60% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1446 (44.450) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568265 = | 1399 (39.040) | 8 (0.240) | 7/262 | 2.9 | 0.64% | intergenic (+18/‑50) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568300 = | 1193 (35.830) | intergenic (+53/‑15) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 1440812 = | 232 (6.470) | 7 (0.200) | 7/270 | 3.0 | 2.9% | intergenic (‑28/‑246) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
| ? | NC_000913 | 1440837 = | 247 (7.200) | intergenic (‑53/‑221) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 7 (0.200) | 7/272 | 3.1 | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 3060164 | 23 (0.640) | 5 (0.140) | 5/272 | 3.8 | 18.5% | coding (412/894 nt) | argP | DNA‑binding transcriptional dual regulator ArgP |
| ? | NC_000913 | = 3060177 | 22 (0.640) | coding (425/894 nt) | argP | DNA‑binding transcriptional dual regulator ArgP | |||||
| * | ? | NC_000913 | = 1440443 | 257 (7.170) | 5 (0.150) | 5/268 | 3.8 | 1.9% | coding (342/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 259 (7.600) | coding (321/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | 570939 = | 1824 (50.890) | 8 (0.230) | 5/274 | 3.9 | 0.45% | coding (47/552 nt) | ybcL | DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570954 = | 1731 (49.710) | coding (62/552 nt) | ybcL | DLP12 prophage; periplasmic protein YbcL | |||||