| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 459,278 | Δ69 bp | coding (391‑459/2355 nt) | lon → | Lon protease |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 459278 | 459346 | 69 | 44 [0] | [0] 44 | lon | Lon protease |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 459277 | 0 (0.000) | 36 (0.780) | 22/116 | 0.3 | 100% | coding (390/2355 nt) | lon | Lon protease |
| ? | NC_000913 | 459347 = | 0 (0.000) | coding (460/2355 nt) | lon | Lon protease | |||||
CAATGGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/459202‑459277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC > NC_000913/459347‑459410 CAATGGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGG < 1:3146134/68‑1 AATGGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGA > 1:851755/1‑68 AATGGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGA > 1:1125040/1‑68 AATGGCGAACACCTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGA < 1:3665925/68‑1 GGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGT < 1:2200062/68‑1 GGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGT < 1:2022735/68‑1 CGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATNAGCGGGAACAGGAAGTGC < 1:3096542/68‑1 ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACG > 1:3673789/1‑68 ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACG > 1:3435921/1‑68 ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACG > 1:3360543/1‑68 ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACG > 1:2276094/1‑68 TTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTC < 1:4067684/68‑1 TTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGC < 1:1230016/68‑1 TTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGC < 1:1218323/68‑1 TGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGA < 1:1680330/68‑1 AGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGAC > 1:2688586/1‑68 TATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGA > 1:4068950/1‑68 ATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGAT < 1:2518485/68‑1 TGGAGCCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCG > 1:252639/1‑68 GGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGG < 1:1844322/68‑1 GAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGC > 1:211748/1‑68 AGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCG > 1:1972763/1‑68 AGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCG > 1:620462/1‑68 TCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCG < 1:26864/68‑1 ACCATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGCCTGGC > 1:557269/1‑68 CATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGG < 1:1793462/68‑1 ATTGATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGA > 1:4159877/1‑68 ATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACC < 1:3914568/68‑1 ATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACC < 1:437766/68‑1 ATGAGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACC < 1:2955054/68‑1 ATGAGCCGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACC < 1:48220/68‑1 TGAGCGGGAACAGGAAGTNCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCA > 1:3099135/1‑68 AGCGGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATT < 1:1550255/68‑1 GGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCT < 1:3105233/68‑1 GGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCT < 1:168797/68‑1 GGGAACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCT < 1:1127279/68‑1 AACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCA < 1:1661247/68‑1 AACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCA < 1:2361465/68‑1 AACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCA < 1:2139131/68‑1 ACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCtg > 1:2398770/1‑66 ACAGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCAC > 1:1267079/1‑68 ACAGGAAGTGCTAACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCAC > 1:2568759/1‑68 AGGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACAT < 1:2383860/68‑1 GAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATAT > 1:3226052/1‑68 GAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATAT > 1:346085/1‑68 AGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGC > 1:2194058/1‑68 AGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGC > 1:1007793/1‑68 TGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCCCATATGCCG > 1:1805303/1‑68 TGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCG > 1:1543824/1‑68 GCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC > 1:2741183/1‑68 GCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC < 1:1068393/68‑1 CAATGGCGAACACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/459202‑459277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC > NC_000913/459347‑459410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |