BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	459,278	Δ69 bp	coding (391‑459/2355 nt)	lon →	Lon protease

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	459278	459346	69	44 [0]	[0] 44	lon	Lon protease

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 459277	0 (0.000)	36 (0.780)	22/116	0.3	100%	coding (390/2355 nt)	lon	Lon protease
*	?	NC_000913	459347 =	0 (0.000)	36 (0.780)	22/116	0.3	100%	coding (460/2355 nt)	lon	Lon protease

ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGGTGCGTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAG  >  NC_000913/459213‑459341

acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg                                                               >  1:3673789‑M1/1‑65 (MQ=255)

acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg                                                               >  1:3435921‑M1/1‑65 (MQ=255)

acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg                                                               >  1:3360543‑M1/1‑65 (MQ=255)

acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg                                                               >  1:2276094‑M1/1‑65 (MQ=255)

  ttttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtc                                                             <  1:4067684‑M1/68‑6 (MQ=255)

    ttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgc                                                           <  1:1218323‑M1/68‑8 (MQ=255)

    ttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgc                                                           <  1:1230016‑M1/68‑8 (MQ=255)

       tGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctga                                                        <  1:1680330‑M1/68‑11 (MQ=255)

                  aGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgac                                             >  1:2688586‑M1/1‑47 (MQ=255)

                    tATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacga                                           >  1:4068950‑M1/1‑45 (MQ=255)

                     aTCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgat                                          <  1:2518485‑M1/68‑25 (MQ=255)

                        tGGAGCCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccg                                       >  1:252639‑M1/1‑41 (MQ=255)

                         ggAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccgg                                      <  1:1844322‑M1/68‑29 (MQ=255)

                          gAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggc                                     >  1:211748‑M1/1‑39 (MQ=255)

                           aGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcg                                    >  1:620462‑M1/1‑38 (MQ=255)

                           aGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcg                                    >  1:1972763‑M1/1‑38 (MQ=255)

                             tCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcg                                  <  1:26864‑M1/68‑33 (MQ=255)

                                   aCCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgcctggc                            >  1:557269‑M1/1‑30 (MQ=255)

                                     cATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcgg                          <  1:1793462‑M1/68‑41 (MQ=255)

                                      aTTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcgga                         >  1:4159877‑M1/1‑27 (MQ=255)

                                          atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc                     <  1:437766‑M1/68‑46 (MQ=255)

                                          atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc                     <  1:3914568‑M1/68‑46 (MQ=255)

                                          atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc                     <  1:2955054‑M1/68‑46 (MQ=255)

                                          atgaGCCGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc                     <  1:48220‑M1/68‑46 (MQ=255)

                                           tgaGCGGGAACAGGAAGTNCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacca                    >  1:3099135‑M1/1‑22 (MQ=255)

                                             aGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccatt                  <  1:1550255‑M1/68‑49 (MQ=255)

                                                gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct               <  1:1127279‑M1/68‑52 (MQ=255)

                                                gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct               <  1:168797‑M1/68‑52 (MQ=255)

                                                gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct               <  1:3105233‑M1/68‑52 (MQ=255)

                                                   aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca            <  1:2139131‑M1/68‑55 (MQ=255)

                                                   aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca            <  1:1661247‑M1/68‑55 (MQ=255)

                                                   aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca            <  1:2361465‑M1/68‑55 (MQ=255)

                                                    aCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgctg           >  1:2398770‑M1/1‑13 (MQ=255)

                                                    aCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcac           >  1:1267079‑M1/1‑13 (MQ=255)

                                                    aCAGGAAGTGCTAacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcac           >  1:2568759‑M1/1‑13 (MQ=255)

                                                      aGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacat         <  1:2383860‑M1/68‑58 (MQ=255)

                                                        gAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatat       >  1:3226052‑M1/1‑9 (MQ=255)

                                                        gAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatat       >  1:346085‑M1/1‑9 (MQ=255)

                                                          aGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgc     >  1:2194058‑M1/1‑7 (MQ=255)

                                                          aGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgc     >  1:1007793‑M1/1‑7 (MQ=255)

                                                            tGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcccatatgccg   >  1:1805303‑M1/1‑5 (MQ=255)

                                                            tGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccg   >  1:1543824‑M1/1‑5 (MQ=255)

                                                             gCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccgc  >  1:2741183‑M1/1‑4 (MQ=255)

                                                             gCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccgc  <  1:1068393‑M1/68‑65 (MQ=255)

ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGGTGCGTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAG  >  NC_000913/459213‑459341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`