BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	459,278	Δ69 bp	coding (391‑459/2355 nt)	lon →	Lon protease

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	459278	459346	69	44 [0]	[0] 44	lon	Lon protease

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 459277	0 (0.000)	36 (0.780)	22/116	0.3	100%	coding (390/2355 nt)	lon	Lon protease
*	?	NC_000913	459347 =	0 (0.000)	36 (0.780)	22/116	0.3	100%	coding (460/2355 nt)	lon	Lon protease

GTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC  >  NC_000913/459282‑459410

acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg                                                               >  1:3673789‑M2/66‑68 (MQ=255)

acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg                                                               >  1:3435921‑M2/66‑68 (MQ=255)

acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg                                                               >  1:3360543‑M2/66‑68 (MQ=255)

acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg                                                               >  1:2276094‑M2/66‑68 (MQ=255)

  ttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTc                                                             <  1:4067684‑M2/5‑1 (MQ=255)

    ttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGc                                                           <  1:1218323‑M2/7‑1 (MQ=255)

    ttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGc                                                           <  1:1230016‑M2/7‑1 (MQ=255)

       tgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGa                                                        <  1:1680330‑M2/10‑1 (MQ=255)

                  agtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATcgac                                             >  1:2688586‑M2/48‑68 (MQ=255)

                    tatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATcgacga                                           >  1:4068950‑M2/46‑68 (MQ=255)

                     atctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGAt                                          <  1:2518485‑M2/24‑1 (MQ=255)

                        tggagccgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCg                                       >  1:252639‑M2/42‑68 (MQ=255)

                         ggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCgg                                      <  1:1844322‑M2/28‑1 (MQ=255)

                          gagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgc                                     >  1:211748‑M2/40‑68 (MQ=255)

                           agtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgcg                                    >  1:620462‑M2/39‑68 (MQ=255)

                           agtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgcg                                    >  1:1972763‑M2/39‑68 (MQ=255)

                             tcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGcgcg                                  <  1:26864‑M2/32‑1 (MQ=255)

                                   accattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGCCTGGc                            >  1:557269‑M2/31‑68 (MQ=255)

                                     cattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCgg                          <  1:1793462‑M2/40‑1 (MQ=255)

                                      attgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGa                         >  1:4159877‑M2/28‑68 (MQ=255)

                                          atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc                     <  1:437766‑M2/45‑1 (MQ=255)

                                          atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc                     <  1:3914568‑M2/45‑1 (MQ=255)

                                          atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc                     <  1:2955054‑M2/45‑1 (MQ=255)

                                          atgagccggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc                     <  1:48220‑M2/45‑1 (MQ=255)

                                           tgagcgggaacaggaagtnctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCa                    >  1:3099135‑M2/23‑68 (MQ=255)

                                             agcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCAtt                  <  1:1550255‑M2/48‑1 (MQ=255)

                                                gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct               <  1:1127279‑M2/51‑1 (MQ=255)

                                                gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct               <  1:168797‑M2/51‑1 (MQ=255)

                                                gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct               <  1:3105233‑M2/51‑1 (MQ=255)

                                                   aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca            <  1:2139131‑M2/54‑1 (MQ=255)

                                                   aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca            <  1:1661247‑M2/54‑1 (MQ=255)

                                                   aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca            <  1:2361465‑M2/54‑1 (MQ=255)

                                                    acaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCattgctgctg           >  1:2398770‑M2/14‑66 (MQ=255)

                                                    acaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGcac           >  1:1267079‑M2/14‑68 (MQ=255)

                                                    acaggaagtgctaACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGcac           >  1:2568759‑M2/14‑68 (MQ=255)

                                                      aggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACat         <  1:2383860‑M2/57‑1 (MQ=255)

                                                        gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACatat       >  1:3226052‑M2/10‑68 (MQ=255)

                                                        gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACatat       >  1:346085‑M2/10‑68 (MQ=255)

                                                          agtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGc     >  1:2194058‑M2/8‑68 (MQ=255)

                                                          agtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGc     >  1:1007793‑M2/8‑68 (MQ=255)

                                                            tgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCCCATATGCCg   >  1:1805303‑M2/6‑68 (MQ=255)

                                                            tgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCg   >  1:1543824‑M2/6‑68 (MQ=255)

                                                             gctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGc  >  1:2741183‑M2/5‑68 (MQ=255)

                                                             gctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGc  <  1:1068393‑M2/64‑1 (MQ=255)

GTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC  >  NC_000913/459282‑459410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`