Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 459,278 | Δ69 bp | coding (391‑459/2355 nt) | lon → | Lon protease |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 459278 | 459346 | 69 | 44 [0] | [0] 44 | lon | Lon protease |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 459277 | 0 (0.000) | 36 (0.780) | 22/116 | 0.3 | 100% | coding (390/2355 nt) | lon | Lon protease |
? | NC_000913 | 459347 = | 0 (0.000) | coding (460/2355 nt) | lon | Lon protease |
ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGGTGCGTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAG > NC_000913/459213‑459341 | acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg > 1:3673789‑M1/1‑65 (MQ=255) acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg > 1:3435921‑M1/1‑65 (MQ=255) acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg > 1:3360543‑M1/1‑65 (MQ=255) acTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacg > 1:2276094‑M1/1‑65 (MQ=255) ttttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtc < 1:4067684‑M1/68‑6 (MQ=255) ttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgc < 1:1218323‑M1/68‑8 (MQ=255) ttCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgc < 1:1230016‑M1/68‑8 (MQ=255) tGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctga < 1:1680330‑M1/68‑11 (MQ=255) aGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgac > 1:2688586‑M1/1‑47 (MQ=255) tATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacga > 1:4068950‑M1/1‑45 (MQ=255) aTCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgat < 1:2518485‑M1/68‑25 (MQ=255) tGGAGCCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccg > 1:252639‑M1/1‑41 (MQ=255) ggAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccgg < 1:1844322‑M1/68‑29 (MQ=255) gAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggc > 1:211748‑M1/1‑39 (MQ=255) aGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcg > 1:620462‑M1/1‑38 (MQ=255) aGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcg > 1:1972763‑M1/1‑38 (MQ=255) tCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcg < 1:26864‑M1/68‑33 (MQ=255) aCCATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgcctggc > 1:557269‑M1/1‑30 (MQ=255) cATTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcgg < 1:1793462‑M1/68‑41 (MQ=255) aTTGATGAGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcgga > 1:4159877‑M1/1‑27 (MQ=255) atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc < 1:437766‑M1/68‑46 (MQ=255) atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc < 1:3914568‑M1/68‑46 (MQ=255) atgaGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc < 1:2955054‑M1/68‑46 (MQ=255) atgaGCCGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacc < 1:48220‑M1/68‑46 (MQ=255) tgaGCGGGAACAGGAAGTNCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggatacca > 1:3099135‑M1/1‑22 (MQ=255) aGCGGGAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccatt < 1:1550255‑M1/68‑49 (MQ=255) gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct < 1:1127279‑M1/68‑52 (MQ=255) gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct < 1:168797‑M1/68‑52 (MQ=255) gggAACAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgct < 1:3105233‑M1/68‑52 (MQ=255) aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca < 1:2139131‑M1/68‑55 (MQ=255) aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca < 1:1661247‑M1/68‑55 (MQ=255) aaCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgca < 1:2361465‑M1/68‑55 (MQ=255) aCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgctg > 1:2398770‑M1/1‑13 (MQ=255) aCAGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcac > 1:1267079‑M1/1‑13 (MQ=255) aCAGGAAGTGCTAacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcac > 1:2568759‑M1/1‑13 (MQ=255) aGGAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacat < 1:2383860‑M1/68‑58 (MQ=255) gAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatat > 1:3226052‑M1/1‑9 (MQ=255) gAAGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatat > 1:346085‑M1/1‑9 (MQ=255) aGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgc > 1:2194058‑M1/1‑7 (MQ=255) aGTGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgc > 1:1007793‑M1/1‑7 (MQ=255) tGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcccatatgccg > 1:1805303‑M1/1‑5 (MQ=255) tGCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccg > 1:1543824‑M1/1‑5 (MQ=255) gCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccgc > 1:2741183‑M1/1‑4 (MQ=255) gCTGacgtcgctgaatagcatcgacgatccggcgcgtctggcggataccattgctgcacatatgccgc < 1:1068393‑M1/68‑65 (MQ=255) | ACTTTTCTGCGAAGGCGGAGTATCTGGAGTCGCCGACCATTGATGAGCGGGAACAGGAAGTGCTGGTGCGTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAG > NC_000913/459213‑459341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |