mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 25 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,087,406 | 0 | A | C | 58.3% | ‑1.8 / 13.6 | 12 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| * | NC_000913 | 395,288 | 0 | A | T | 57.7% | 8.3 / 39.2 | 26 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,291 | 0 | C | G | 57.7% | 11.6 / 36.9 | 26 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,294 | 0 | C | G | 54.5% | 4.5 / 32.6 | 22 | G332R (GGC→CGC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 310,934 | 0 | A | C | 47.6% | 36.8 / 28.2 | 42 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 4,414,906 | 0 | T | G | 45.8% | 3.6 / 35.5 | 24 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 3,352,754 | 0 | A | C | 45.5% | 18.7 / 15.2 | 22 | V91G (GTG→GGG) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 3,563,481 | 0 | T | G | 45.2% | 8.7 / 43.1 | 31 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.9% | 26.2 / 90.6 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,233,922 | 0 | G | T | 44.1% | 16.8 / 33.5 | 34 | Q75K (CAA→AAA) | higA | antitoxin/DNA‑binding transcriptional repressor HigA |
| * | NC_000913 | 2,318,354 | 0 | A | C | 43.8% | 34.6 / 16.7 | 32 | V508G (GTG→GGG) | rcsC | sensory histidine kinase RcsC |
| * | NC_000913 | 2,357,894 | 0 | C | A | 42.1% | 12.6 / 16.7 | 19 | pseudogene (79/186 nt) | ypaA | protein YpaA |
| * | NC_000913 | 4,021,824 | 0 | T | G | 38.9% | 12.7 / 18.0 | 18 | G533G (GGT→GGG) | ubiB | ubiquinone biosynthesis protein UbiB |
| * | NC_000913 | 3,655,277 | 0 | A | C | 34.5% | 46.9 / 14.4 | 29 | V209G (GTG→GGG) | yhiD | inner membrane protein YhiD |
| * | NC_000913 | 3,089,590 | 0 | T | G | 33.3% | 34.2 / 13.1 | 24 | V436G (GTA→GGA) | galP | galactose:H(+) symporter |
| * | NC_000913 | 1,702,245 | 0 | A | C | 31.4% | 68.7 / 16.8 | 35 | T5P (ACC→CCC) | add | adenosine deaminase |
| * | NC_000913 | 987,014 | 0 | A | C | 29.2% | 45.2 / 14.0 | 24 | intergenic (‑32/+571) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 821,440 | 0 | C | T | 26.8% | 62.8 / 22.2 | 41 | F216F (TTC→TTT) | ybhM | Bax1‑I family protein YbhM |
| * | NC_000913 | 2,648,148 | 0 | A | C | 25.0% | 51.2 / 12.0 | 24 | G1380G (GGT→GGG) | yfhM | alpha2‑macroglobulin |
| * | NC_000913 | 3,773,700 | 0 | A | T | 23.7% | 97.1 / 14.0 | 38 | N474Y (AAC→TAC) | mtlA | mannitol‑specific PTS enzyme IICBA component |