mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,061 | 0 | G | A | 42.3% | 25.8 / 14.8 | 26 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.9% | 48.1 / 24.0 | 44 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 39.6% | 52.0 / 56.2 | 53 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,206,435 | 0 | C | T | 36.7% | 35.1 / 16.9 | 30 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,001,918 | 0 | A | C | 36.4% | 55.3 / 18.7 | 44 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 3,206,444 | 0 | T | A | 32.3% | 49.1 / 13.2 | 31 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 753,125 | 0 | T | A | 30.9% | 92.5 / 29.4 | 55 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.0% | 56.1 / 19.4 | 37 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,740,909 | 0 | T | G | 26.9% | 86.8 / 14.7 | 52 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate aminotransferase |
| * | NC_000913 | 1,315,936 | 0 | T | A | 26.7% | 93.3 / 11.9 | 45 | K34* (AAA→TAA) | yciG | protein YciG |
| * | NC_000913 | 4,429,984 | 0 | T | G | 24.4% | 78.2 / 11.0 | 41 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 4,101,514 | 0 | G | T | 22.2% | 123.6 / 11.8 | 46 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 48 (0.810) | 6 (0.110) | 6/258 | 4.5 | 10.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 60 (1.080) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 3158936 = | 41 (0.690) | 3 (0.050) | 3/260 | 5.8 | 6.7% | coding (2211/2220 nt) | ygiQ | radical SAM superfamily protein YgiQ |
| ? | NC_000913 | = 4451959 | 45 (0.810) | coding (902/1503 nt) | ytfR | galactofuranose ABC transporter putative ATP binding subunit | |||||
| * | ? | NC_000913 | 2257965 = | 56 (0.940) | 3 (0.050) | 3/266 | 5.9 | 5.2% | coding (403/939 nt) | psuG | pseudouridine‑5'‑phosphate glycosidase |
| ? | NC_000913 | = 2257961 | 55 (0.960) | coding (407/939 nt) | psuG | pseudouridine‑5'‑phosphate glycosidase | |||||