mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,163,121 | C→T | A100V (GCG→GTG) | gtsA → | mannose/glucose ABC transporter substrate‑binding protein |
| RA | 1,163,732 | A→G | N304D (AAC→GAC) | gtsA → | mannose/glucose ABC transporter substrate‑binding protein |
| RA | 1,185,783 | (G)7→8 | intergenic (‑51/‑120) | PP_1033 ← / → cumA | sulfatase domain‑containing protein/multicopper oxidase |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,560,509 | C→T | G99D (GGC→GAC) | PP_1366 ← | transcriptional regulator MvaT |
| RA | 1,828,233 | A→C | V671G (GTG→GGG) | mutS ← | DNA mismatch repair protein MutS |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 3,311,259 | C→G | G188R (GGC→CGC) | PP_2907 ← | two‑component system response regulator |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,445,476 | T→C | intergenic (+141/‑398) | PP_3935 → / → PP_3938 | hypothetical protein/hypothetical protein |
| RA | 4,640,692 | A→T | M20K (ATG→AAG) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,983,564 | (C)8→7 | coding (30/696 nt) | flgH ← | flagellar L‑ring protein |
| RA | 5,216,752 | G→A | A65A (GCC→GCT) | PP_4592 ← | metal dependent hydrolase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1285878 = | 0 (0.000) | 341 (0.970) | 165/282 | 0.1 | 100% | coding (322/573 nt) | PP_5742 | membrane protein |
| ? | NC_002947 | = 1303482 | NA (NA) | intergenic (+386/+43) | PP_1133/PP_1134 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | = 1285879 | 0 (0.000) | 437 (1.250) | 162/280 | 0.2 | 100% | coding (323/573 nt) | PP_5742 | membrane protein |
| ? | NC_002947 | 2930421 = | NA (NA) | intergenic (‑177/+388) | PP_2563/PP_2564 | antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase | |||||