mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,168,578 | C→A | intergenic (+47/‑71) | oprB‑I → / → yeaD | carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,982,697 | C→T | P457S (CCG→TCG) | PP_1770 → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 3,385,634 | C→T | A105V (GCT→GTT) | tnpT‑I → | cointegrate resolution protein T |
| RA | 3,450,733 | C→A | R45R (CGC→CGA) | gpD → | tail formation |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 744925 = | NA (NA) | 361 (1.190) | 158/284 | 0.1 | 94.0% | intergenic (‑587/+44) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | 1015813 = | 23 (0.080) | intergenic (‑40/‑728) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
| * | ? | NC_002947 | = 746963 | NA (NA) | 298 (0.990) | 139/284 | 0.4 | 88.8% | intergenic (‑87/‑707) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 1015822 | 38 (0.120) | intergenic (‑49/‑719) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
| * | ? | NC_002947 | 1849125 = | 1 (0.000) | 375 (1.280) | 161/276 | 0.0 | 67.1% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2184368 | 367 (1.250) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1849128 | 1 (0.000) | 271 (0.920) | 146/278 | 0.2 | 67.0% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2182694 = | 266 (0.900) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||