mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,348,783 | C→T | intergenic (‑243/+511) | galP‑I ← / ← PP_1174 | porin‑like protein/hypothetical protein |
| RA | 2,839,129 | C→A | intergenic (‑116/+67) | sad‑I ← / ← PP_2489 | NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase |
| RA | 3,824,800 | C→A | A117S (GCT→TCT) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,827,923 | G→T | R30S (CGT→AGT) | ptxS ← | 2‑ketogluconate utilization repressor |
| RA | 4,717,084 | T→C | F116S (TTC→TCC) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,743,195 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,197 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,199 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,202 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,205 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,207 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,221 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,223 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,226 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,367,426 | G→A | A367V (GCC→GTC) | ftsH ← | integral membrane ATP‑dependent zinc metallopeptidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6183852 | 6183858 | 7 | 241 [0] | [0] NA | atpI/– | ATP synthase protein I/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1 = | 0 (0.000) | 240 (0.960) | 123/294 | 0.4 | 100% | intergenic (–/+146) | –/parB | –/chromosome‑partitioning protein |
| ? | NC_002947 | = 6183851 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | NC_002947 | 3008024 = | 11 (0.040) | 252 (1.010) | 140/292 | 0.1 | 68.8% | coding (2640/3621 nt) | PP_2627 | membrane protein |
| ? | NC_002947 | 3368519 = | 218 (0.880) | intergenic (+220/‑141) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase | |||||
| * | ? | NC_002947 | = 3008029 | 11 (0.040) | 212 (0.850) | 112/294 | 0.8 | 61.9% | coding (2645/3621 nt) | PP_2627 | membrane protein |
| ? | NC_002947 | = 3385530 | 250 (1.000) | coding (501/546 nt) | PP_2985 | hypothetical protein | |||||