mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 28.3% | 153.7 / 72.3 | 93 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 28.0% | 125.7 / 62.3 | 95 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 24.1% | 129.1 / 45.1 | 88 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 23.5% | 163.7 / 41.4 | 85 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4235485 | 1299 (16.950) | 47 (0.660) | 32/268 | 1.6 | 3.6% | intergenic (+77/‑37) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_pae_pgi | = 4235489 | 1317 (18.480) | intergenic (+81/‑33) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_pae_pgi | = 4242610 | 1074 (14.010) | 25 (0.340) | 20/274 | 3.7 | 2.4% | coding (167/891 nt) | malG | maltose transporter subunit |
| ? | NC_000913_3_pae_pgi | = 4242624 | 1026 (14.080) | coding (153/891 nt) | malG | maltose transporter subunit | |||||
| * | ? | NC_000913_3_pae_pgi | = 4234838 | 1125 (14.680) | 26 (0.360) | 19/270 | 3.9 | 2.4% | intergenic (‑1605/‑328) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_pae_pgi | = 4234843 | 1043 (14.520) | intergenic (‑1610/‑323) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_pae_pgi | 4239417 = | NA (NA) | 25 (0.340) | 18/274 | 4.2 | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_pgi | 4239450 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | 4227543 = | 1120 (14.610) | 21 (0.290) | 17/274 | 4.5 | 1.9% | intergenic (+32/‑188) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_pae_pgi | 4227568 = | 1054 (14.460) | intergenic (+57/‑163) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_pae_pgi | 4240001 = | 1357 (17.710) | 22 (0.310) | 16/268 | 4.6 | 1.7% | intergenic (+6/+38) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_pae_pgi | 4240029 = | 1270 (17.820) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913_3_pae_pgi | = 4245931 | 1154 (15.060) | 17 (0.230) | 15/278 | 5.1 | 1.5% | intergenic (‑252/‑113) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase |
| ? | NC_000913_3_pae_pgi | = 4245955 | 1115 (15.070) | intergenic (‑276/‑89) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase | |||||
| * | ? | NC_000913_3_pae_pgi | 4226590 = | 1110 (14.480) | 18 (0.250) | 14/274 | 5.3 | 1.7% | coding (2763/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_pae_pgi | 4226621 = | 1034 (14.190) | coding (2794/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913_3_pae_pgi | = 4219847 | 932 (12.160) | 21 (0.300) | 13/264 | 5.4 | 2.4% | coding (1252/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913_3_pae_pgi | = 4219854 | 827 (11.780) | coding (1259/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913_3_pae_pgi | 4250511 = | 894 (11.660) | 15 (0.210) | 13/272 | 5.6 | 1.8% | pseudogene (291/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913_3_pae_pgi | 4250535 = | 819 (11.320) | pseudogene (315/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||