mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,722 | 0 | A | G | 55.9% | 5.3 / 69.2 | 59 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 1,327,121 | 0 | C | T | 52.6% | 18.9 / 101.7 | 76 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 43.6% | 10.3 / 64.2 | 55 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,348,705 | 0 | A | G | 42.5% | 22.9 / 54.3 | 47 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 5,903,165 | 0 | A | C | 36.0% | 14.2 / 13.9 | 26 | intergenic (‑129/‑139) | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| * | NC_002947 | 5,988,911 | 0 | A | . | 34.9% | 90.5 / 52.9 | 44 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,905 | 0 | T | C | 31.8% | 50.1 / 31.5 | 44 | intergenic (+199/‑347) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,895 | 0 | A | G | 25.6% | 62.5 / 21.3 | 40 | intergenic (+189/‑357) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,894 | 0 | C | T | 25.0% | 68.2 / 21.4 | 40 | intergenic (+188/‑358) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,013,248 | 0 | A | T | 23.3% | 50.7 / 11.7 | 30 | intergenic (+76/+55) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| * | NC_002947 | 1,013,234 | 0 | C | A | 22.2% | 44.1 / 12.1 | 27 | intergenic (+62/+69) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| * | NC_002947 | 1,013,242 | 0 | G | C | 22.2% | 56.1 / 12.8 | 29 | intergenic (+70/+61) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| * | NC_002947 | 1,013,235 | 0 | A | T | 21.4% | 38.3 / 10.9 | 29 | intergenic (+63/+68) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| * | NC_002947 | 197,632 | 0 | T | C | 21.1% | 66.3 / 14.0 | 38 | T1046T (ACT→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,013,241 | 0 | G | C | 20.7% | 60.2 / 12.8 | 29 | intergenic (+69/+62) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| * | NC_002947 | 197,572 | 0 | G | A | 20.0% | 105.0 / 22.4 | 57 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,013,249 | 0 | T | G | 20.0% | 47.2 / 12.8 | 30 | intergenic (+77/+54) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| Marginal new junction evidence (lowest skew 10 of 150 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6000932 | 27 (0.760) | 4 (0.140) | 4/230 | 3.6 | 15.0% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | = 6000966 | 24 (0.850) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||
| * | ? | NC_002947 | 278743 = | 34 (0.950) | 7 (0.220) | 5/262 | 3.7 | 18.5% | intergenic (‑238/+76) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| ? | NC_002947 | 278794 = | 31 (0.960) | intergenic (‑289/+25) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein | |||||
| * | ? | NC_002947 | 6130933 = | 39 (1.090) | 5 (0.150) | 5/276 | 3.8 | 11.8% | coding (589/1080 nt) | copB‑II | copper resistance protein B |
| ? | NC_002947 | 6130954 = | 38 (1.120) | coding (568/1080 nt) | copB‑II | copper resistance protein B | |||||
| * | ? | NC_002947 | 5145379 = | 37 (1.040) | 5 (0.150) | 5/278 | 3.9 | 11.1% | intergenic (+20/+52) | PP_4531/srmB | hypothetical protein/ATP‑dependent DEAD‑box RNA helicase |
| ? | NC_002947 | 5145420 = | 45 (1.310) | intergenic (+61/+11) | PP_4531/srmB | hypothetical protein/ATP‑dependent DEAD‑box RNA helicase | |||||
| * | ? | NC_002947 | = 2050595 | 16 (0.450) | 3 (0.110) | 3/216 | 3.9 | 27.4% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050631 | 4 (0.150) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 14.3% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 215345 = | 17 (0.500) | coding (20851/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 9.7% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 214025 = | 50 (1.460) | coding (19531/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 10.4% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 208730 = | NA (NA) | coding (14236/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 10.6% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 205415 = | 41 (1.200) | coding (10921/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 11.1% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 202730 = | 37 (1.080) | coding (8236/26049 nt) | PP_0168 | putative surface adhesion protein | |||||