mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 46.4% | 5.9 / 84.3 | 56 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 21.6% | 99.4 / 16.3 | 37 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 21.1% | 78.7 / 16.5 | 38 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2292528 | 46 (1.710) | 4 (0.160) | 3/264 | 3.2 | 8.6% | noncoding (66/76 nt) | USA300TCH1516_02174 | tRNA‑Val |
| ? | USA300TCH1516_ALE | = 2292586 | 42 (1.660) | noncoding (8/76 nt) | USA300TCH1516_02174 | tRNA‑Val | |||||
| * | ? | NC_012417 | 2664 = | 639 (1.170) | 5 (0.010) | 5/272 | 42.7 | 0.69% | coding (11/582 nt) | USA300HOU_RS14900 | hypothetical protein |
| ? | NC_012417 | 2715 = | 828 (1.560) | intergenic (‑41/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||