mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 57.1% | 14.6 / 59.3 | 49 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 31.6% | 48.4 / 28.9 | 38 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 29.7% | 62.8 / 24.1 | 37 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 802141 | 31 (1.140) | 3 (0.120) | 3/256 | 3.9 | 9.2% | intergenic (+382/+242) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase |
| ? | CP000730 | = 802168 | 31 (1.240) | intergenic (+409/+215) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase | |||||
| * | ? | CP000730 | 378476 = | 34 (1.250) | 3 (0.120) | 3/260 | 4.0 | 9.3% | coding (84/801 nt) | yceB | hypothetical protein |
| ? | CP000730 | 378548 = | 27 (1.060) | coding (156/801 nt) | yceB | hypothetical protein | |||||
| * | ? | CP000730 | 174622 = | 31 (1.140) | 3 (0.120) | 3/258 | 4.0 | 10.8% | coding (568/669 nt) | cap5A | capsular polysaccharide biosynthesis protein Cap5A |
| ? | CP000730 | 174670 = | 21 (0.830) | coding (616/669 nt) | cap5A | capsular polysaccharide biosynthesis protein Cap5A | |||||