mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,582,132 | 0 | T→A | 100.0% | 3.9 | 3 | Y90* (TAT→TAA) | yhhZ | putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
| * | NC_000913 | 4,358,415 | 4 | .→A | 1.0% | 2.1 0.0 ‑0.0 | 201 | coding (203/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| * | NC_000913 | 1,019,336 | 1 | .→A | 1.0% | 1.8 0.0 ‑0.1 | 192 | coding (718/1041 nt) | ompA | outer membrane protein A (3a;II*;G;d) |
| * | NC_000913 | 1,019,338 | 1 | .→C | 1.0% | 1.8 0.0 ‑0.3 | 194 | coding (716/1041 nt) | ompA | outer membrane protein A (3a;II*;G;d) |
| * | NC_000913 | 3,363,011 | 1 | .→A | 1.0% | 1.8 0.0 ‑0.1 | 192 | coding (205/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 3,658,551 | 1 | .→A | 1.0% | 1.8 0.0 ‑0.3 | 205 | coding (186/528 nt) | gadE | gad regulon transcriptional activator |
| * | NC_000913 | 3,658,551 | 2 | .→A | 1.0% | 1.8 0.0 ‑0.3 | 205 | coding (186/528 nt) | gadE | gad regulon transcriptional activator |
| * | NC_000913 | 4,085,176 | 1 | .→G | 0.9% | 1.7 0.0 ‑0.4 | 212 | coding (647/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| * | NC_000913 | 120,250 | 1 | .→G | 1.1% | 1.6 0.0 ‑0.6 | 190 | coding (1302/1374 nt) | aroP | aromatic amino acid transporter |
| * | NC_000913 | 2,641,702 | 1 | .→G | 1.1% | 1.6 0.0 ‑0.4 | 187 | coding (103/1119 nt) | ispG | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
| * | NC_000913 | 2,768,266 | 1 | .→C | 1.0% | 1.6 0.0 ‑0.5 | 197 | coding (557/864 nt) | yfjP | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| * | NC_000913 | 3,405,251 | 1 | .→G | 1.1% | 1.6 0.0 ‑0.4 | 188 | intergenic (+220/‑185) | yrdE/accB | pseudogene, yedZ paralog/acetyl CoA carboxylase, BCCP subunit |
| * | NC_000913 | 718,955 | 1 | .→C | 1.0% | 1.5 0.0 ‑0.5 | 206 | coding (1506/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 952,587 | 1 | .→C | 0.9% | 1.5 0.0 ‑0.2 | 211 | coding (968/2283 nt) | pflB | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| * | NC_000913 | 4,358,415 | 3 | .→C | 1.0% | 1.5 0.0 ‑0.1 | 201 | coding (203/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| * | NC_000913 | 3,424,237 | 0 | C→T | 100.0% | 1.3 | 1 | noncoding (2547/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,246 | 0 | G→T | 100.0% | 1.3 | 1 | noncoding (2538/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,264 | 0 | G→T | 100.0% | 1.3 | 1 | noncoding (2520/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,358,415 | 2 | .→G | 1.0% | 1.3 0.0 ‑0.1 | 201 | coding (203/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| * | NC_000913 | 3,652,940 | 0 | C→A | 100.0% | 1.0 | 1 | G87C (GGC→TGC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,288 | 0 | G→T | 100.0% | 0.9 | 1 | noncoding (2496/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,083,985 | 1 | .→G | 1.0% | 0.9 0.0 ‑0.0 | 191 | coding (1838/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| * | NC_000913 | 574,875 | 0 | G→A | 100.0% | 0.6 | 1 | I293I (ATC→ATT) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,255 | 0 | C→A | 100.0% | 0.6 | 1 | noncoding (2529/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 20,091 | 0 | A→T | 100.0% | 0.5 | 2 | F75Y (TTC→TAC) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,424,162 | 0 | A→C | 100.0% | 0.5 | 1 | noncoding (2622/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,207 | 0 | T→C | 100.0% | 0.5 | 1 | noncoding (2577/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,216 | 0 | A→C | 100.0% | 0.5 | 1 | noncoding (2568/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,229 | 0 | A→C | 100.0% | 0.5 | 1 | noncoding (2555/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,358,415 | 1 | .→C | 1.0% | 0.5 0.0 ‑0.0 | 201 | coding (203/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| * | NC_000913 | 991,857 | 1 | .→G | 1.1% | 0.4 0.0 ‑0.0 | 188 | coding (1236/2613 nt) | pepN | aminopeptidase N |
| * | NC_000913 | 3,424,254 | 0 | T→C | 100.0% | 0.4 | 1 | noncoding (2530/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 382,306 | 0 | C→A | 100.0% | 0.3 | 2 | F211L (TTC→TTA) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 4,174,249 | 1 | .→A | 1.0% | 0.3 0.0 ‑0.0 | 192 | coding (778/951 nt) | coaA | pantothenate kinase |
| * | NC_000913 | 3,762,542 | 0 | C→A | 100.0% | 0.1 | 2 | S120R (AGC→AGA) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913 | 1,361,607 | 1 | .→G | 1.0% | 0.0 0.0 ‑0.0 | 191 | coding (488/765 nt) | puuD | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| * | NC_000913 | 2,726,574 | 0 | G→T | 100.0% | ‑0.1 | 1 | noncoding (2611/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,726,689 | 0 | G→A | 100.0% | ‑0.1 | 1 | noncoding (2496/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,726,908 | 0 | C→A | 100.0% | ‑0.1 | 1 | noncoding (2277/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,119 | 0 | G→T | 100.0% | ‑0.1 | 1 | noncoding (2066/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,130 | 0 | G→T | 100.0% | ‑0.1 | 1 | noncoding (2055/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |