mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 36.6% | 13.1 / 34.2 | 41 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 30.8% | 25.2 / 28.2 | 41 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 20.0% | 107.2 / 21.4 | 65 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 131 (1.000) | 16 (0.130) | 16/556 | 10.8 | 10.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 145 (1.140) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1096961 = | 118 (0.900) | 27 (0.280) | 9/414 | 11.0 | 24.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 86 (0.910) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 133 (1.010) | 12 (0.090) | 12/556 | 12.7 | 8.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 146 (1.140) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3292448 | 127 (0.960) | 6 (0.050) | 6/556 | 16.2 | 4.8% | intergenic (+16/+27) | yraK/rsmI | putative fimbrial‑like adhesin protein/16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3292454 | 115 (0.900) | intergenic (+22/+21) | yraK/rsmI | putative fimbrial‑like adhesin protein/16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1417458 = | 157 (1.190) | 6 (0.050) | 6/554 | 16.2 | 3.8% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913 | 1417483 = | 151 (1.190) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4365125 = | 142 (1.080) | 6 (0.050) | 6/560 | 16.3 | 4.1% | coding (232/339 nt) | cutA | divalent‑cation tolerance protein, copper sensitivity |
| ? | NC_000913 | 4365142 = | 140 (1.090) | coding (215/339 nt) | cutA | divalent‑cation tolerance protein, copper sensitivity | |||||
| * | ? | NC_000913 | 2819836 = | 121 (0.920) | 5 (0.040) | 5/554 | 17.0 | 4.2% | coding (2176/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | 2819907 = | 112 (0.880) | coding (2105/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 3667761 | 183 (1.390) | 5 (0.040) | 5/560 | 17.1 | 2.8% | intergenic (‑181/+30) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| ? | NC_000913 | = 3667775 | 169 (1.320) | intergenic (‑195/+16) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 5 (0.040) | 4/552 | 17.7 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 3103426 | 114 (0.870) | 4 (0.030) | 4/556 | 17.8 | 3.5% | coding (414/1053 nt) | mutY | adenine DNA glycosylase |
| ? | NC_000913 | = 3103489 | 107 (0.840) | coding (477/1053 nt) | mutY | adenine DNA glycosylase | |||||