mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 30.2% | 41.2 / 20.2 | 53 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 28.0% | 49.7 / 20.8 | 53 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.3% | 73.2 / 26.1 | 63 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 126 (0.980) | 45 (0.480) | 17/420 | 7.3 | 33.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 89 (0.950) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 2066632 | 114 (0.880) | 26 (0.200) | 15/570 | 11.3 | 18.8% | noncoding (722/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102208 | NA (NA) | noncoding (736/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274419 | NA (NA) | 26 (0.200) | 15/570 | 11.3 | NA | noncoding (731/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274423 | NA (NA) | noncoding (727/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 189 (1.460) | 13 (0.100) | 12/562 | 12.6 | 7.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 133 (1.060) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 13 (0.100) | 12/562 | 12.6 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3191716 = | 141 (1.090) | 9 (0.070) | 9/564 | 14.3 | 6.4% | intergenic (+20/+23) | yqiI/glgS | fimbrial protein/motility and biofilm regulator |
| ? | NC_000913 | 3191736 = | 124 (0.990) | intergenic (+40/+3) | yqiI/glgS | fimbrial protein/motility and biofilm regulator | |||||
| * | ? | NC_000913 | 2915909 = | 155 (1.200) | 8 (0.060) | 8/568 | 15.0 | 5.1% | coding (853/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | NC_000913 | 2915929 = | 146 (1.150) | coding (873/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
| * | ? | NC_000913 | = 4542690 | 192 (1.490) | 6 (0.050) | 6/562 | 16.2 | 3.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 132 (1.060) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1825935 | 176 (1.360) | 7 (0.060) | 6/558 | 16.2 | 4.0% | intergenic (‑310/+20) | spy/astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| ? | NC_000913 | = 1825939 | 167 (1.340) | intergenic (‑314/+16) | spy/astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 3123423 = | 128 (0.990) | 6 (0.050) | 6/566 | 16.3 | 4.5% | coding (383/2172 nt) | glcB | malate synthase G |
| ? | NC_000913 | 3123520 = | 128 (1.020) | coding (286/2172 nt) | glcB | malate synthase G | |||||