mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,706,061 | 1 | .→T | 1.2% | 2.0 0.0 ‑0.2 | 167 | intergenic (‑271/+37) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 3,424,236 | 0 | T→A | 100.0% | 1.9 | 3 | noncoding (2548/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,379,770 | 1 | .→A | 1.1% | 1.8 0.0 ‑0.5 | 176 | coding (3/396 nt) | frdC | fumarate reductase (anaerobic), membrane anchor subunit |
| * | NC_000913 | 1,224,494 | 1 | .→A | 1.1% | 1.7 0.0 ‑0.6 | 175 | coding (52/267 nt) | minE | cell division topological specificity factor |
| * | NC_000913 | 4,015,971 | 1 | .→A | 1.1% | 1.7 0.0 ‑0.5 | 178 | coding (199/816 nt) | ysgA | putative carboxymethylenebutenolidase |
| * | NC_000913 | 4,466,296 | 4 | .→C | 1.2% | 1.7 0.0 ‑0.6 | 168 | intergenic (‑116/+3) | treB/treR | trehalose‑specific PTS enzyme: IIB and IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| * | NC_000913 | 3,101,711 | 2 | .→C | 1.2% | 1.6 0.0 ‑0.4 | 165 | intergenic (‑88/+96) | yggN/yggL | DUF2884 family putative periplasmic protein/DUF469 family protein |
| * | NC_000913 | 4,374,921 | 1 | .→C | 1.2% | 1.6 0.0 ‑0.5 | 171 | coding (737/1029 nt) | epmB | EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| * | NC_000913 | 2,704,854 | 1 | .→G | 1.2% | 1.5 0.0 ‑0.3 | 171 | coding (456/975 nt) | lepB | leader peptidase (signal peptidase I) |
| * | NC_000913 | 3,663,325 | 1 | .→C | 1.2% | 1.5 0.0 ‑0.6 | 171 | coding (2912/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated |
| * | NC_000913 | 4,364,720 | 1 | .→G | 1.1% | 1.5 0.0 ‑0.3 | 180 | coding (323/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| * | NC_000913 | 2,997,404 | 0 | T→G | 100.0% | 1.4 | 2 | Q66P (CAG→CCG) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 3,176,321 | 1 | .→C | 1.1% | 1.4 0.0 ‑0.4 | 176 | coding (513/828 nt) | cpdA | 3',5' cAMP phosphodiesterase |
| * | NC_000913 | 3,424,225 | 0 | G→T | 100.0% | 1.2 | 3 | noncoding (2559/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,713,163 | 1 | .→G | 1.2% | 1.2 0.0 ‑0.1 | 170 | coding (72/564 nt) | tag | 3‑methyl‑adenine DNA glycosylase I, constitutive |
| * | NC_000913 | 15,665 | 0 | A→C | 100.0% | 1.1 | 1 | D74A (GAC→GCC) | insL1 | IS186 transposase |
| * | NC_000913 | 3,427,342 | 0 | C→A | 100.0% | 1.1 | 1 | noncoding (1421/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,427,391 | 0 | A→C | 100.0% | 1.1 | 1 | noncoding (1372/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,238,912 | 1 | .→A | 1.2% | 1.0 0.0 ‑0.1 | 168 | coding (378/1521 nt) | mglA | methyl‑galactoside ABC transporter ATPase |
| * | NC_000913 | 3,424,283 | 0 | G→A | 100.0% | 1.0 | 1 | noncoding (2501/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,284 | 0 | A→C | 100.0% | 1.0 | 1 | noncoding (2500/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,007 | 0 | A→C | 100.0% | 1.0 | 4 | noncoding (1777/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,444,687 | 1 | .→G | 1.2% | 1.0 0.0 ‑0.1 | 173 | coding (576/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| * | NC_000913 | 4,604,013 | 1 | .→A | 1.2% | 1.0 0.0 ‑0.1 | 166 | coding (537/726 nt) | yjjQ | putative transcriptional regulator |
| * | NC_000913 | 15,664 | 0 | G→T | 100.0% | 0.9 | 1 | D74Y (GAC→TAC) | insL1 | IS186 transposase |
| * | NC_000913 | 3,427,405 | 0 | A→C | 100.0% | 0.9 | 1 | noncoding (1358/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,062,508 | 1 | .→G | 1.2% | 0.8 0.0 ‑0.1 | 168 | coding (816/933 nt) | ldtA | L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 153,892 | 1 | .→G | 1.1% | 0.7 0.0 ‑0.1 | 181 | coding (1535/2598 nt) | htrE | putative outer membrane usher protein |
| * | NC_000913 | 574,881 | 0 | A→C | 100.0% | 0.7 | 2 | F291L (TTT→TTG) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,427,320 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (1443/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,427,427 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (1336/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,130,429 | 0 | G→A | 100.0% | 0.6 | 1 | L84L (CTG→CTA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,262 | 0 | A→C | 100.0% | 0.6 | 3 | noncoding (2522/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,427,412 | 0 | A→C | 100.0% | 0.6 | 1 | noncoding (1351/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,039,023 | 0 | T→G | 100.0% | 0.6 | 1 | noncoding (1505/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,208,402 | 0 | T→G | 100.0% | 0.6 | 1 | noncoding (256/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| * | NC_000913 | 688,138 | 0 | G→T | 100.0% | 0.5 | 2 | R292R (CGC→CGA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,130,430 | 0 | A→C | 100.0% | 0.5 | 1 | S85R (AGC→CGC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 4,467,519 | 1 | .→C | 1.2% | 0.5 0.0 ‑0.0 | 166 | intergenic (+35/‑106) | mgtL/mgtA | regulatory leader peptide for mgtA/magnesium transporter |
| * | NC_000913 | 3,430,902 | 1 | .→C | 1.2% | 0.4 0.0 ‑0.1 | 164 | coding (514/573 nt) | tsaC | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
| * | NC_000913 | 3,441,071 | 1 | .→C | 1.2% | 0.3 0.0 ‑0.1 | 171 | coding (605/621 nt) | rpsD | 30S ribosomal subunit protein S4 |